Pairwise Alignments

Query, 279 a.a., sugar ABC transporter permease from Pseudomonas simiae WCS417

Subject, 265 a.a., O-antigen export system permease protein RfbD from Pseudomonas fluorescens FW300-N2E2

 Score =  144 bits (363), Expect = 2e-39
 Identities = 91/265 (34%), Positives = 139/265 (52%), Gaps = 19/265 (7%)

Query: 13  SLLRSLWVNRQLIAQMTRREVIGRYKGSFLGLGWSFLNPLLMLAVYTFVFSVVFRSRWGI 72
           SL  SLW  R  I    +RE   RY+ S  G  W+ LNPL M+ VYT +FS + R+R   
Sbjct: 4   SLHYSLWSYRGFILGSVKREFQSRYRNSLFGALWTVLNPLSMILVYTVIFSHIMRARLPG 63

Query: 73  AESGGEESKAMFAVVLFVGMIVYGLFAEILNRAPSLIVGNVNYVKKVVFPLEILPVVAAC 132
            E G       ++V L  G++ +GLFAEI  R+  + + N N +KK+ FP   LPV+   
Sbjct: 64  VEDG-----MAYSVYLCAGLLTWGLFAEITTRSQGMFLENANLLKKISFPRICLPVIV-- 116

Query: 133 AALFHALVSLTVWL---MAYTLLIGVPHWHVLFLPLVLFPLLVL----ALGLAWFLAALG 185
             LF+A ++  + L   + + L+ G   W  + L L L PLL L    A GL   L  L 
Sbjct: 117 --LFNAGINFAIILGLFLGFLLITG--RWPGITL-LALVPLLALQVMFAAGLGMLLGILN 171

Query: 186 VFLRDVGQTVAIITTMMMFLAPVFFPVKNLPPEFQPLIMANPLTFIIEQSRDVLIWGKMP 245
           VF RDVGQ   I      +L P+ +P+  LPP  Q L+  NP+T +++  +++ ++ + P
Sbjct: 172 VFFRDVGQLFGICLQFWFWLTPIVYPMTILPPPIQQLLAFNPMTALMQSYQNLFLYNQWP 231

Query: 246 DFMGLLNYFIVALVMFWAGYIWFQK 270
            +  L+   +V L++   G   F++
Sbjct: 232 VWSSLVPLLVVGLLLCTLGLRMFRR 256