Pairwise Alignments

Query, 1303 a.a., ATP-dependent helicase HrpA from Pseudomonas simiae WCS417

Subject, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

 Score =  258 bits (659), Expect = 2e-72
 Identities = 168/467 (35%), Positives = 250/467 (53%), Gaps = 23/467 (4%)

Query: 72  LPIAAKRDEIKEALNKHQVLIIAGETGSGKTTQLPKICLEIGRGQFGLIGHTQPRRIAAR 131
           LPI     ++   +     LI+    G+GK+T  P   L+ G G  G I   +PRR+AAR
Sbjct: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62

Query: 132 SVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQNDRYLERYDTIIV 191
           ++A  +A++L   +G  VGY+VR E++    T ++++T+GI+    QND  L+  D +I 
Sbjct: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122

Query: 192 DEAHERSLNIDFLLGY-LKTLLPRRPDLKVIITSATIDLERFSKHFDDAPIVEVSGRTFP 250
           DE HERS++ D  L   L+     R DLK+++ SAT+D +        A  VE  GR FP
Sbjct: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182

Query: 251 VDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDVLVFLPGEREI 310
           ++  Y+PL             D  +  A+   +  +  +E       G +L FLPG   I
Sbjct: 183 IEIRYQPL-----------RSDEPLVTAMQRQIRHLLQHET------GSLLAFLPGAASI 225

Query: 311 RDAAEVLRKAQLKHTEILPLYARLSPAEQQR-IFQSHPGRR-VVLATNVAETSLTVPGIR 368
               E L        EI PLY ++  A QQR I  +  GRR VVLATN+AETSLT+ GIR
Sbjct: 226 NQLTEQLSDLA-SEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIR 284

Query: 369 YVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYSEEDFIGRP 428
            V+DSG  R +R+  +  + RL    I+Q+SA QR GR GR+EPGICVRLYSE     +P
Sbjct: 285 IVLDSGLERSARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQP 344

Query: 429 EFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELSAVDRNSQL 488
              +PE+L T+LA + L++      + +D  ++  P   A +    LLQ L  +D  +Q+
Sbjct: 345 WVPEPEMLHTDLAPLALELAQWG-AQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQI 403

Query: 489 TPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRER 535
           T  G++   L V+PR+  MLL A +LG       +A  + +++P  +
Sbjct: 404 TAAGKEAHLLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPERQ 450