Pairwise Alignments

Query, 1303 a.a., ATP-dependent helicase HrpA from Pseudomonas simiae WCS417

Subject, 1300 a.a., ATP-dependent RNA helicase HrpA from Klebsiella michiganensis M5al

 Score = 1202 bits (3111), Expect = 0.0
 Identities = 639/1315 (48%), Positives = 871/1315 (66%), Gaps = 27/1315 (2%)

Query: 1    MTDQAP-AIDQLLNNLDHAMLADRHRLRRQLLELRK--KPDEEK--LAQWVARMQASCAQ 55
            MT+Q      QL+  LD  ML D+ R  R+L  ++K   PD ++  L +    ++ +  +
Sbjct: 1    MTEQQKITFSQLVTRLDGLMLRDKSRFARRLHGVKKVKNPDAQQAILQEMAQEIEQAAGR 60

Query: 56   VTARRASLPVIRYDDSLPIAAKRDEIKEALNKHQVLIIAGETGSGKTTQLPKICLEIGRG 115
            V  R A+ P I Y ++LP++ K+ EI +A+  HQV+I+AGETGSGKTTQLPKIC+E+GRG
Sbjct: 61   VLLREAARPAITYPENLPVSQKKQEILDAVRDHQVVIVAGETGSGKTTQLPKICMELGRG 120

Query: 116  QFGLIGHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLA 175
              GLIGHTQPRR+AAR+VA+R+AEEL T  G  +GY+VRF D    NT++KLMTDGILLA
Sbjct: 121  VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA 180

Query: 176  ETQNDRYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKH 235
            E Q DR L +YDTII+DEAHERSLNIDFLLGYL+ LLPRRPDLK+IITSATID ERFS+H
Sbjct: 181  EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRH 240

Query: 236  FDDAPIVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERR 295
            F++API+EVSGRT+PV+  YRP+  + D+      D L   QAI   +DE+       R 
Sbjct: 241  FNNAPIIEVSGRTYPVEVRYRPIVEDADD---TERDQL---QAIFDAVDELG------RE 288

Query: 296  SPGDVLVFLPGEREIRDAAEVLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLAT 355
            SPGD+L+F+ GEREIRD A+ L K  L+HTE+LPLYARLS +EQ R+FQ+H GRR+VLAT
Sbjct: 289  SPGDILIFMSGEREIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQAHSGRRIVLAT 348

Query: 356  NVAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGIC 415
            NVAETSLTVPGI+YVID GTARISRYS+R KVQRLPIE +SQASANQRKGRCGRV  GIC
Sbjct: 349  NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 416  VRLYSEEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNL 475
            +RLYSE+DF+ RP FTDPEILRTNLA+VILQM  L LG+I  FPF+E PD + I DG  L
Sbjct: 409  IRLYSEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 476  LQELSAVDRNSQ-----LTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQ 530
            L+EL A+  + Q     LTP+GRQL++LPVDPR+ RM+LEA K G ++E +I+ SA+SIQ
Sbjct: 469  LEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 531  DPRERPPERQQAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNY 590
            DPRERP ++QQA+D+ H ++ D +SDF   VNLW    EQ++ L+++  R  CR +FLNY
Sbjct: 529  DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNY 588

Query: 591  LRLREWRDSHRQLSLICRDMQLTVNKEPADFPKLHKAVLSGLLSQIGQKTED-GDYLGAR 649
            LR+REW+D + QL  + +++ L V  EPA++ ++H A+L+GLLS IG K  D  ++ GAR
Sbjct: 589  LRVREWQDIYTQLRQVVKELGLPVKSEPAEYREIHTALLTGLLSHIGMKDADKQEFTGAR 648

Query: 650  QRRFWIHPSSGIGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPH 709
              RF I P SG+ KK P+W M AELVET++L+ R+ A+I+ +W+EP+A HLIK+++ EPH
Sbjct: 649  NARFSIFPGSGLFKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPH 708

Query: 710  WEKKRGQVVAFEQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLTA 769
            WE+ +G V+A E++T++GL +V  R V+Y  IDP + RELFIR  LV G+ Q+R      
Sbjct: 709  WERGQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRE 768

Query: 770  NQQLLEQLDELEAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKINSQKDPQLL 829
            N +L  +++ELE K+RRRDIL D+ETL+ FYD R+  ++     FD W+K  S++ P LL
Sbjct: 769  NLKLRNEIEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDKWWKQASRETPDLL 828

Query: 830  IMREEDVLAREASEVTAAHYPDTLHLGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPP 889
               +  ++   A +V+   YP+  H G+L+L L+Y FEP    DGVT+ +P PLL  +  
Sbjct: 829  NFEKSMLIKEGAEQVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVEE 888

Query: 890  ERLEWLVPGVIEAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELL 949
               EW +PG+     IAL+++LPK +R+NFVP P++ +A L R    +  L  +L REL 
Sbjct: 889  AGFEWQIPGLRRELIIALIKSLPKPVRRNFVPAPNYAEAFLGRATPLELPLLDSLERELR 948

Query: 950  RMTGARVSDEAWAEAAQQVESHLKMNLEVVDGQGKFLGEGRDLAEL-TARFAEASQAALA 1008
            RMTG  +  EAW    +QV  +LK+   VVD + K L EGR L +L  A   +  +   A
Sbjct: 949  RMTGVTIDREAW--QWEQVPDYLKITFRVVDDKNKKLHEGRSLQDLKDALKGKVQETLSA 1006

Query: 1009 VPQTAKSQQPVEAKVFAAVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTAAEAEFQH 1068
            V         +    F  + E  +QK     +  +PALV+E  +V    F    E + + 
Sbjct: 1007 VADDGIELSGLHIWSFGRLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQEM 1066

Query: 1069 RRALQRLLMQQLAEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDTCVLEGET 1128
             R L+RLL+  +  P K+L  KLP   +LGL +   G++  L++D +   +D  + E   
Sbjct: 1067 WRGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGG 1126

Query: 1129 NLPRDGAGLAALAERKRGSWTEHAERLARLTLDVLKLWHGLQKRFKGKIDLAQAVALNDI 1188
             +  +  G AAL E+ R    E    +A+    +L     + KR KG++D+  A+ L+DI
Sbjct: 1127 PVWSE-EGFAALHEKVRAELNETVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDI 1185

Query: 1189 KQQLSHLVYPGFVRETPAHWFKELPRYLKAIELRLEKLPSQVQKDRVWSGELAGLWTHYE 1248
            K Q+S LVY GFV         +  RYL+AIE RLEK+     +DR    ++  L   ++
Sbjct: 1186 KSQMSGLVYRGFVTGNGFRRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESLQQRWQ 1245

Query: 1249 NRLKKHAQEGKRDPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSLVEA 1303
              L K   + ++D  ++  RW +EE RVSLFAQQLGT  PISDKR+ +    + A
Sbjct: 1246 QWLNKLPPQRRQDDDVQEIRWMIEELRVSLFAQQLGTPYPISDKRVLQAMEQIAA 1300