Pairwise Alignments

Query, 1303 a.a., ATP-dependent helicase HrpA from Pseudomonas simiae WCS417

Subject, 1293 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella sp. ANA-3

 Score = 1231 bits (3186), Expect = 0.0
 Identities = 652/1290 (50%), Positives = 879/1290 (68%), Gaps = 28/1290 (2%)

Query: 15   LDHAMLADRHRLRRQLLELRKKPDEEKLAQWVARM----QASCAQVTARRASLPVIRYDD 70
            L     +D  R+RR+L +L K+ D +K  Q +A++    QA+  +V  R  + P I+Y D
Sbjct: 15   LKQCFQSDASRIRRRLFKLNKEADSDKKTQELAKLAEQAQAAFEKVEQRLKARPKIQYPD 74

Query: 71   SLPIAAKRDEIKEALNKHQVLIIAGETGSGKTTQLPKICLEIGRGQFGLIGHTQPRRIAA 130
            +LP++  R+EI +A++++QV+IIAGETGSGKTTQLPKICLE+G G  G IGHTQPRR+AA
Sbjct: 75   NLPVSGMREEIAKAISENQVVIIAGETGSGKTTQLPKICLELGLGSRGFIGHTQPRRLAA 134

Query: 131  RSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQNDRYLERYDTII 190
            RSVA+RVAEEL +PLG LVG++VRF D   S + IKLMTDGILLAE  +DRYL++YDTII
Sbjct: 135  RSVATRVAEELQSPLGELVGFKVRFADALKSESYIKLMTDGILLAELTSDRYLDQYDTII 194

Query: 191  VDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAPIVEVSGRTFP 250
            +DEAHERSLNIDF+LGYLK +L +RPDLK+IITSATID+ERFSKHF++API+EVSGRT+P
Sbjct: 195  IDEAHERSLNIDFILGYLKQILKKRPDLKIIITSATIDVERFSKHFNNAPIIEVSGRTYP 254

Query: 251  VDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDVLVFLPGEREI 310
            V+T YRPL   QD E      DL   + I A +DE+ A         GD+L+F+ GEREI
Sbjct: 255  VETRYRPLV--QDTEA-----DLDQIEGIFAAVDELVA------EGLGDILIFMNGEREI 301

Query: 311  RDAAEVLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAETSLTVPGIRYV 370
            RD AE L +   + TEILPLYARLS  EQ ++F SH GRR+VLATNVAETSLTVPGIRYV
Sbjct: 302  RDTAEQLNRRNYRDTEILPLYARLSYGEQSKVFSSHTGRRIVLATNVAETSLTVPGIRYV 361

Query: 371  IDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYSEEDFIGRPEF 430
            ID GTARISRYSYR KVQRLPIE ISQASANQR+GRCGRV PGIC+RLY E DF  RP F
Sbjct: 362  IDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNSRPAF 421

Query: 431  TDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELSAVDR---NSQ 487
            TDPEILRTNLA+VILQML + LG+I  FPFIEPPD + I DGF LL+EL AV +   N  
Sbjct: 422  TDPEILRTNLASVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKGNIV 481

Query: 488  LTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQQAADQAH 547
            LTPLGRQL+++PVDPR+ RM++E+ +LG LQEVL++A+ +SIQDPRERP +++QA+D+AH
Sbjct: 482  LTPLGRQLSQIPVDPRLARMVVESHQLGCLQEVLVIAAGLSIQDPRERPMDKKQASDEAH 541

Query: 548  AQWKDPDSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNYLRLREWRDSHRQLSLIC 607
             ++ DP SDF   VNLW+  +EQ++EL+AS  R  CR  +L YLR+REW+D + QL    
Sbjct: 542  RRFADPHSDFVSWVNLWQHLKEQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQAV 601

Query: 608  RDMQLTVNKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSGIGKKRPQ 667
             D++  +N+ PA++  LH+A+LSGLLS IG K  + +YLGAR R+F++ P S + KK P+
Sbjct: 602  HDLKWRLNETPANYDALHRALLSGLLSHIGFKDNNNEYLGARNRKFFVFPGSPLAKKGPK 661

Query: 668  WLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAFEQITLFG 727
            W+M AEL ET+KL+AR  AKI+ +W+EPLA HLIKKNH EPH+E K+G V+AFE   L+G
Sbjct: 662  WIMAAELTETSKLFARCCAKIEPEWLEPLAAHLIKKNHLEPHFEAKQGSVIAFENQVLYG 721

Query: 728  LIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLTANQQLLEQLDELEAKARRR 787
            L VV RR V YGPI+PV +RE+FIR  L  G++Q++     ANQ+LLE ++ LE K+RRR
Sbjct: 722  LTVVHRRRVQYGPINPVEAREIFIRSALAEGQLQTKEAFFLANQKLLEDVEALEHKSRRR 781

Query: 788  DILADEETLYAFYDARLPAEIHQTATFDSWYKINSQKDPQLLIMREEDVLAREASEVTAA 847
            DIL DE+ L  FY+ R+P  I+    F SW+K   +  P LL   +  ++ R A  ++A 
Sbjct: 782  DILVDEQVLMDFYEPRIPEGIYNAPKFFSWWKEARRTQPDLLDFNKSLLMQRSADHISAL 841

Query: 848  HYPDTLHLGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPPERLEWLVPGVIEAKCIAL 907
             +PDT H G++ L LSYHF+P    DGV++ +P  LL  +     +WLV G+ E KC+AL
Sbjct: 842  DFPDTWHKGNIRLQLSYHFDPAASDDGVSVHIPVALLNQIDDTDFDWLVAGMREEKCVAL 901

Query: 908  VRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTGARVSDEAWAEAAQQ 967
            +++LPK LR+NFVP PD+ +A +Q ++    SL  A+ ++LLRM+G RV+ E +     Q
Sbjct: 902  IKSLPKGLRRNFVPAPDYARACVQAMQPFSASLLDAMCKQLLRMSGTRVNPEDF--DVTQ 959

Query: 968  VESHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVEAKV---F 1024
            + +HL+MN ++ D +GK + +GR L  L A        A A+ Q A      EA     F
Sbjct: 960  MPAHLQMNFKIEDDKGKLVAQGRVLDTLKAEL--QGVVAKAIRQVADKGIEKEALTEWSF 1017

Query: 1025 AAVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTAAEAEFQHRRALQRLLMQQLAEPA 1084
              + ++ +Q+     +  +PAL++   +V    F    EA+  HR+ L+RLL+  +  P 
Sbjct: 1018 GDLPKQFEQRKGNYQVRAFPALIDNKDSVAIKLFDDEFEAQTAHRQGLRRLLLLNIPSPV 1077

Query: 1085 KFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDTCVLEGETNLPRDGAGLAALAERK 1144
            K L+  LP   +L + +   G++  L++DI+ A++   + E   ++ RD A      +  
Sbjct: 1078 KHLQQALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDV-RDAAQFEQAKDWV 1136

Query: 1145 RGSWTEHAERLARLTLDVLKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGFVRET 1204
            R      AE++A     +L L+ G++KR KGKI L  A A++DI+ QL  LV+ GFV   
Sbjct: 1137 RQELNPTAEQIALKVEQILTLYQGIKKRTKGKISLDIAFAMSDIQSQLDQLVFKGFVEAC 1196

Query: 1205 PAHWFKELPRYLKAIELRLEKLPSQVQKDRVWSGELAGLWTHYENRLKKHAQEGKRDPQL 1264
              +   ++ RYLKAIE R++KLP    +DR+    +  +      +L K  +       L
Sbjct: 1197 GWNRLADVARYLKAIETRIDKLPVDPTRDRLHMQSITKVQEALAAQLAKVPRSQPVPAAL 1256

Query: 1265 ELYRWWLEEYRVSLFAQQLGTKVPISDKRL 1294
               RW +EEYRVS FAQ LGT  PIS+KR+
Sbjct: 1257 IEARWMIEEYRVSCFAQALGTAYPISEKRI 1286