Pairwise Alignments

Query, 204 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Klebsiella michiganensis M5al

 Score = 73.2 bits (178), Expect = 3e-18
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 13/184 (7%)

Query: 6   DAHLLERLLKGEQRAYKELVTTYQSAMRAVAYAIVGQRHADEVVQDAWLSVVRNLAKFEG 65
           D  L+ER+ KG+Q+A+  LV  YQ  + ++    V      +VVQ++++   R L  F G
Sbjct: 7   DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPPGDIADVVQESFVKAWRALDSFRG 66

Query: 66  RSSLKTWLLTITANAAKG-RYKQNRREVLLDDLPSPHGTLGDDRFSPDDGHWAVAPYAWH 124
            S+  TWL  I  N AK     Q RR       PS       D  + D  ++        
Sbjct: 67  DSAFYTWLYRIAVNTAKNYLVAQGRRP------PS------SDVDANDAENFESGGALKE 114

Query: 125 QDTPEALLTEDELRKCLEHTLLSLSELQSSVLVLRERQGLELEEICNLLTLSLSNVRVLL 184
              PE L+  +ELR+ +  T+ SL E     + LRE  G+  EEI  ++   +  VR  +
Sbjct: 115 ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGMSYEEIAAIMDCPVGTVRSRI 174

Query: 185 HRAR 188
            RAR
Sbjct: 175 FRAR 178