Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 634 a.a., DNA topoisomerase IV from Pseudomonas fluorescens FW300-N2C3

 Score =  378 bits (970), Expect = e-109
 Identities = 218/550 (39%), Positives = 326/550 (59%), Gaps = 15/550 (2%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           ++Y++ +I+VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   + +I
Sbjct: 7   SSYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHAKSVQVI 62

Query: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124
           +H D S+ V D+GRG+PVD+H EEGVS  E+I+T LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 63  LHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 122

Query: 125 VNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVG--DSETTGTQIHFKPSAETFKNIH 182
           VNALS ++ + V+R G  ++ T+  G     +++VG      TGT ++F P  + F +  
Sbjct: 123 VNALSTQVRVRVKRDGNEYQMTFADGYKATELEVVGTVGKRNTGTSVYFAPDPKYFDSPK 182

Query: 183 FSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAF-VEYLNTNKTAVNQVF 241
           FS   L   ++  + L  G+ +  +D+ +G++  + YE GLR++ V+ ++  +   ++ F
Sbjct: 183 FSVSRLKHVLKAKAVLCPGLLVSFEDKATGEKVEWHYEDGLRSYLVDAVSGFERLPDEPF 242

Query: 242 HFNIQREDGIGVEIALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSALTRNLNTYIEA 300
             ++       V+ AL W     E++   + N IP   GGTH+ G R  L   +  + E 
Sbjct: 243 CGSLAGNKE-AVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEF 301

Query: 301 EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSD 360
             L  +  V    +D  E +  ++S+K+ +P+FS QTK++L S E    V   +   FS 
Sbjct: 302 RNLLPR-GVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSL 360

Query: 361 FLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE 420
           +L  NP     +    I+ A  R    KA +   RK       LPGKLADC  +DP  SE
Sbjct: 361 WLNANPETGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPMRSE 417

Query: 421 LYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG 480
           L+LVEGDSAGGSAKQ R++  QAILPL+GKILN  +    ++++SQEV  +  A+G   G
Sbjct: 418 LFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVAIGVDPG 477

Query: 481 RDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKK 540
            ++  + +LRY  I I+ DAD DG HI TLL   F +    L++ G++Y+A PPLY++  
Sbjct: 478 AED--MSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMPPLYRIDL 535

Query: 541 GKQEQYIKDD 550
           GK+  Y  D+
Sbjct: 536 GKEIYYALDE 545



 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 724 LDWLMAESTK-RHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLM 782
           LD L+AE  + +  + R+KGLGEMNP QL ETTMDP  RR++++T++D     ++ + L+
Sbjct: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEATSEMMDMLL 611

Query: 783 G-DAVEPRRDFIES 795
                  R+ ++ES
Sbjct: 612 AKKRAGDRKSWLES 625