Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

 Score = 1115 bits (2884), Expect = 0.0
 Identities = 550/802 (68%), Positives = 655/802 (81%), Gaps = 2/802 (0%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           N YDS+SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMVFEVVDNSIDEALAG+C DI + 
Sbjct: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62

Query: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124
           IH D S++V D+GRGIP ++H EE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122

Query: 125 VNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETTGTQIHFKPSAETFKNIHFS 184
           VNALSE+++LT+ R GKI  QTY HGVP+ P+ +VG++E TGT + F PSA+TF NI F 
Sbjct: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIEFH 182

Query: 185 WDILAKRIRELSFLNSGVGIVLKDERS-GKEELFKYEGGLRAFVEYLNTNKTAVNQ-VFH 242
           +DILAKR+RELSFLNSGV I L DER   K++ F YEGG++AFV +LN NKT +++ VFH
Sbjct: 183 YDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 242

Query: 243 FNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEG 302
           FN +REDGI VE+A+QWND F EN+ CFTNNIPQRDGGTHL GFR ALTR LN Y++ EG
Sbjct: 243 FNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 302

Query: 303 LAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFL 362
            +KK + AT+GDDAREGLTA++SVKVPDPKFSSQTKDKLVSSEVK+AVE  M +  +DFL
Sbjct: 303 FSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFL 362

Query: 363 LENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELY 422
            ENP+EAK V  K+IDAARAREAARKAREMTRRKGALD+AGLPGKLADCQEKDPALSELY
Sbjct: 363 AENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELY 422

Query: 423 LVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 482
           +VEGDSAGGSAKQGRNR+ QAILPLKGKILNVEKARFDKM+SSQEV TLITALGCGIGRD
Sbjct: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482

Query: 483 EYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGK 542
           EYN DKLRYHNIIIMTDADVDGSHIRTLLLTFF+RQ+PELIERGYIYIAQPPLYKVKKGK
Sbjct: 483 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGK 542

Query: 543 QEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKTLKRLSRLY 602
           QEQYIKD++AM +Y    A++ A LH+N +AP ++GE LE+LV  +   +K ++R+SR Y
Sbjct: 543 QEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRY 602

Query: 603 PQELTEHFIYLPAVSLEQLGDHAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWL 662
           P  +    IY+P ++ E   D AA++ W  +   +L   E     Y   +  + E NV+L
Sbjct: 603 PYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYL 662

Query: 663 PEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERKKQVKEFKE 722
           P++++ +HG+++    + D   S +Y  +  L   L  L++ GA+I+RGER + +  F  
Sbjct: 663 PKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAA 722

Query: 723 ALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLM 782
           ALDWL+ ES +  +IQRYKGLGEMNPDQLWETTMDP  RRM++VTIEDA+GAD++F TLM
Sbjct: 723 ALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782

Query: 783 GDAVEPRRDFIESNALAVSNLD 804
           GD VEPRR FIE+NAL V+NLD
Sbjct: 783 GDQVEPRRAFIETNALKVANLD 804