Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 645 a.a., DNA gyrase subunit B from Synechococcus elongatus PCC 7942

 Score =  554 bits (1427), Expect = e-162
 Identities = 287/561 (51%), Positives = 391/561 (69%), Gaps = 11/561 (1%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           N Y ++ I+VL+GL+ VRKRPGMYIG T    GLHH+V+EVVDN++DEALAG+C+ I + 
Sbjct: 3   NEYGASQIQVLEGLEPVRKRPGMYIGSTGP-KGLHHLVYEVVDNAVDEALAGYCNTIDVR 61

Query: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124
           +  D S  V DNGRGIP D+H + G SA E ++T+LHAGGKF    YKVSGGLHGVGVSV
Sbjct: 62  LLEDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVSV 121

Query: 125 VNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETT-GTQIHFKPSAETF-KNIH 182
           VNALSE + +TV R GK  +Q +  G P   +++  D++   GTQ+ FKP A  F +   
Sbjct: 122 VNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSETTE 181

Query: 183 FSWDILAKRIRELSFLNSGVGIVLKDER-------SGKEELFKYEGGLRAFVEYLNTNKT 235
           F +  LA R++EL++LN+GV I   DER          +E + +EGG+R +V Y+NT+K 
Sbjct: 182 FDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQ 241

Query: 236 AVNQVFHFNIQREDGIGVEIALQWN-DSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294
           A++    F    +DG+ VE ALQW  D++++N+L F NNI   DGGTH+ G ++ LTR +
Sbjct: 242 ALHSEIIFVQSEKDGVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRTM 301

Query: 295 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354
           NT        K      +G++ REGLTAI+SVKVPDP+F  QTK KL ++EV+  V+  +
Sbjct: 302 NTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLV 361

Query: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414
           G+  +++L  +P+ A L++ K I A  A EAAR+ARE+ RRK  L+ + LPGKLADC  +
Sbjct: 362 GETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 421

Query: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474
           DP  SE+++VEGDSAGGSAKQGR+RR QAILPL+GKILN+EK    K+  + E+  LITA
Sbjct: 422 DPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITA 481

Query: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534
           LG GI  +E++  +LRYH I+IMTDADVDG+HIRTLLLTFF+R    L+E+GYIYIA PP
Sbjct: 482 LGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIACPP 541

Query: 535 LYKVKKGKQEQYIKDDDAMEE 555
           LYK+++G+   Y  ++  ++E
Sbjct: 542 LYKLERGRNHYYCYNERELQE 562



 Score = 90.5 bits (223), Expect = 3e-22
 Identities = 43/61 (70%), Positives = 49/61 (80%)

Query: 735 HTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLMGDAVEPRRDFIE 794
           +TIQR+KGLGEM P QLWETTMDP  R M RV IEDA  AD+IF  LMGD V+PRR+FIE
Sbjct: 573 YTIQRFKGLGEMMPQQLWETTMDPETRTMKRVEIEDAAEADRIFTILMGDRVQPRREFIE 632

Query: 795 S 795
           +
Sbjct: 633 T 633