Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 686 a.a., DNA topoisomerase IV subunit B from Sinorhizobium meliloti 1021

 Score =  430 bits (1106), Expect = e-124
 Identities = 248/569 (43%), Positives = 356/569 (62%), Gaps = 19/569 (3%)

Query: 2   SEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61
           S+ + YD+++I+VL+GL+ VR+RPGMYIG TD+   LHH+  EV+DNS+DEA+AGH + I
Sbjct: 42  SDGSDYDASAIEVLEGLEPVRRRPGMYIGGTDE-KALHHLFAEVIDNSMDEAVAGHANFI 100

Query: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120
            + +  D  +TV DNGRGIPV+ H K  G S  EV+MTVLHAGGKFD  +Y+ SGGLHGV
Sbjct: 101 DVNLDADGYLTVTDNGRGIPVENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGV 160

Query: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETT-GTQIHFKPSAETF- 178
           GVSVVNALS++L + V R+ +++ Q +  G+ +  ++ +GD     GT++ F P  + F 
Sbjct: 161 GVSVVNALSDDLEVEVARNRRLYRQRFSRGIAQGGLEDLGDVHNRRGTRVRFHPDPQIFG 220

Query: 179 KNIHFSWDILAKRIRELSFLNSGVGI------VLKDERSGKEE--LFKYEGGLRAFVEY- 229
            +  F    L +  R  ++L  GV I       L  E S   +  +F + GGL+ ++   
Sbjct: 221 PHARFEPARLFRMARSKAYLFGGVEIRWSCDPALLPEGSEIPDRAVFHFPGGLKDYLAAT 280

Query: 230 LNTNKTAVNQVFHFNIQREDGIG-VEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288
           L    T   ++F    ++  G G +E A+ W    ++ +  + N IP  +GGTH  G R 
Sbjct: 281 LGKEFTVTREIFAGKSEKSGGHGSLEWAVTWYGG-DQQIHSYCNTIPTPEGGTHEAGLRI 339

Query: 289 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348
           ALT+ L  Y  AE    K     T DD       ++SV + +P+F  QTKDKL + E + 
Sbjct: 340 ALTKGLKNY--AELTQNKRAAIVTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQR 397

Query: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408
            VE  +   F  +L +NP EA  ++  +++ A  R   RK +E++R K A+    LPGKL
Sbjct: 398 IVENALRDPFDHYLADNPAEAAKLLDWVVERAEERVRRRKEKEVSR-KTAVRKLRLPGKL 456

Query: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468
           ADC +     +EL++VEGDSAGGSAKQ RNR  QAILPL+GKILNV  A  +K+ ++Q++
Sbjct: 457 ADCAQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQI 516

Query: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528
           G L+ ALGCG  R +Y  + LRY  IIIMTDADVDG+HI +LL+TFF++++PELI  G++
Sbjct: 517 GDLVQALGCGT-RSKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGGHL 575

Query: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEEYM 557
           Y+A PPLY++ +G +  Y +DD   EE M
Sbjct: 576 YLAVPPLYRLSQGSKTLYARDDAHREELM 604



 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 739 RYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDA--IGADQIFNTLMGDAVEPRRDFIESN 796
           R+KGLGEM P QL ETTMDPA+R +L+V I+D    G     ++LMG   E R  FI+  
Sbjct: 618 RFKGLGEMLPAQLKETTMDPAKRTLLKVEIDDVDFEGTRDAVDSLMGTKAEARFRFIQER 677

Query: 797 ALAVSNLD 804
           A+   NLD
Sbjct: 678 AVFADNLD 685