Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

 Score =  432 bits (1111), Expect = e-125
 Identities = 248/566 (43%), Positives = 347/566 (61%), Gaps = 17/566 (3%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           + Y + SI+VL+GL+ VR+RPGMYIG TD+ + LHH+V E++DN++DEA+AG+   I I 
Sbjct: 15  DAYTARSIEVLEGLEPVRRRPGMYIGGTDERA-LHHLVAEILDNAMDEAVAGYAQVIDID 73

Query: 65  IHPDESITVRDNGRGIPVDVHKE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 123
           +  D S+ VRDNGRGIP+D H      SA EVI+T LH+GGKF  ++YKVSGGLHGVG+S
Sbjct: 74  LAVDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGIS 133

Query: 124 VVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETT-GTQIHFKPSAETF-KNI 181
           VVNALS+ L + V R   +W Q +  G P  P++ +G +    GTQ+ F P AE F    
Sbjct: 134 VVNALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRFHPDAEIFGPRA 193

Query: 182 HFSWDILAKRIRELSFLNSGVGI-------VLKDERS-GKEELFKYEGGLRAFVEYLNTN 233
            F   +L +  R  ++L  GV I       +L D+     E++F +  GL  ++ +   N
Sbjct: 194 RFKPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALAN 253

Query: 234 KTAVN-QVFHFNIQREDGIG-VEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 291
           +  V  + F       D +G VE AL W +        + N IP  +GGTH  G R+ALT
Sbjct: 254 RPLVGGRTFAGTANLPDDMGTVEWALCWPEDDEPFFNSYVNTIPTPEGGTHEAGLRNALT 313

Query: 292 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 351
           R L ++ E  G  KK   A T +D   G   + S+ + DP+F  QTK+KL S E    VE
Sbjct: 314 RGLRSFAEMSG-NKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVE 372

Query: 352 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADC 411
           Q +   F  +L   P+ A L++   ++ A  R   R+A+E T RK A     LPGKL+DC
Sbjct: 373 QALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKE-TSRKTATKKLRLPGKLSDC 431

Query: 412 QEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTL 471
                  +EL+LVEGDSAGGSAKQ R+R+TQA+LPL+GKILNV  A  DK+  +QE+  L
Sbjct: 432 TRSTRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDL 491

Query: 472 ITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIA 531
             ALGCG  R  ++++ LRY  ++IMTDADVDG+HI +LL+TFFFR++P L+  G++Y+A
Sbjct: 492 AEALGCGT-RGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLA 550

Query: 532 QPPLYKVKKGKQEQYIKDDDAMEEYM 557
            PPLY++ +G    Y +DD   ++ M
Sbjct: 551 MPPLYRLTQGGTSVYARDDAHKDQLM 576



 Score = 56.2 bits (134), Expect = 6e-12
 Identities = 36/77 (46%), Positives = 43/77 (55%), Gaps = 9/77 (11%)

Query: 737 IQRYKGLGEMNPDQLWETTMDPAQRRMLRVTI---------EDAIGADQIFNTLMGDAVE 787
           I R+KGLGEM P QL ETTM  A R++LRVT+         EDA    ++   LMG   E
Sbjct: 588 ISRFKGLGEMPPAQLRETTMAYATRQLLRVTVPGGKTEEDREDARETAKLVEELMGRKPE 647

Query: 788 PRRDFIESNALAVSNLD 804
            R  FI+ NA    NLD
Sbjct: 648 LRFRFIQENARFAENLD 664