Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 652 a.a., DNA topoisomerase 4 subunit B from Phaeobacter inhibens DSM 17395

 Score =  409 bits (1050), Expect = e-118
 Identities = 232/557 (41%), Positives = 341/557 (61%), Gaps = 16/557 (2%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           +TYD++SI+VL+GL+ VR+RPGMYIG TD+ + LHHMV E++DNS+DEA+AGH + I + 
Sbjct: 12  DTYDASSIEVLEGLEPVRQRPGMYIGGTDERA-LHHMVAEILDNSMDEAVAGHANRIEVT 70

Query: 65  IHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 123
           +H D ++T+ DNGRGIP+D H K    SA EVI+  LHAGGKF   +Y+ SGGLHGVG S
Sbjct: 71  LHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGSS 130

Query: 124 VVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETT-GTQIHFKPSAETFKNIH 182
           VVNALS+ +++ V ++ +++EQ +  G+P+ P++ +G +    GT + F    + F +  
Sbjct: 131 VVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTFHADEQIFGSHR 190

Query: 183 FSWDILAKRIRELSFLNSGVGIVLK----DERSGKEELFKYEGGLRAFV-EYLNTNKTAV 237
           F    L   +R  ++L SGV I  K    D  +  E  F + GGL+ ++ E L  +    
Sbjct: 191 FKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNETPTEATFHFPGGLKDYLTEVLGKSSVYA 250

Query: 238 NQVFHFNIQREDGIG----VEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRN 293
            Q F   ++  +       VE A+ W  S +     + N +P  +GGTH+ GF +A+ + 
Sbjct: 251 EQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAGFWAAILKG 310

Query: 294 LNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 353
           +  Y +  G   K   + T +D   G  A++S  + DP F  QTKD+L +      VE  
Sbjct: 311 IKAYGDLVG--NKKAASITREDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAAKMVENS 368

Query: 354 MGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413
           +  +F ++L  +   A  ++  ++  A  R   RK  + T+RK A     LPGKL DC  
Sbjct: 369 VRDHFDNWLAADTKSAGAILDFLVLRAEER-LRRKQEKETQRKSATKKLRLPGKLTDCTS 427

Query: 414 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 473
           KD A +EL++VEGDSAGGS K  RNR  QA+LPLKGKILNV  A  +K+ ++ E+  L  
Sbjct: 428 KDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEIRDLCE 487

Query: 474 ALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQP 533
           ALG G G  ++N+D LRY  IIIMTDADVDG+HI +LL+TFFF Q+  LI+ G++Y+A P
Sbjct: 488 ALGVGTG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACP 546

Query: 534 PLYKVKKGKQEQYIKDD 550
           PL+++ +G +  Y  D+
Sbjct: 547 PLFRLTQGARRVYCLDE 563



 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 737 IQRYKGLGEMNPDQLWETTMDPAQRRMLRVTI-EDAIG-ADQIFNTLMGDAVEPRRDFIE 794
           + R+KGLGEM+   L ETTMDP  R+++RVTI ED  G   ++   LMG   E R  +I+
Sbjct: 582 VSRFKGLGEMDAKDLKETTMDPTTRKLIRVTIDEDEPGETGELVEQLMGKKPELRYQYIQ 641

Query: 795 SNALAVSNLD 804
            NA  V  LD
Sbjct: 642 ENAKFVEELD 651