Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 657 a.a., type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Dechlorosoma suillum PS

 Score =  344 bits (883), Expect = 8e-99
 Identities = 209/554 (37%), Positives = 314/554 (56%), Gaps = 24/554 (4%)

Query: 1   MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD 60
           MS  + Y+++SI VLKGL+ V++RPGMY    +      H++ EV+DN+ DEA+AG    
Sbjct: 1   MSNPSDYNASSITVLKGLEPVKQRPGMYTRTENP----LHIIQEVIDNAADEAIAGFAKS 56

Query: 61  ISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGL 117
           I + +H D SI+V DNGRGIPV++H  E     EV+ T LHAGGKF+  +   Y  SGGL
Sbjct: 57  ILVTVHVDGSISVADNGRGIPVELHPVENAPTVEVVFTRLHAGGKFNKGAGGAYSFSGGL 116

Query: 118 HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDS--ETTGTQIHFKPSA 175
           HGVGVSV NALS  L + V R G +    +  G   EP+  +GD+  + +GT++   P A
Sbjct: 117 HGVGVSVTNALSTRLEVEVAREGGMHRLVFAAGDVVEPLARIGDAPKKASGTRVRAWPDA 176

Query: 176 ETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFV-EYLNTNK 234
           + F +       L   +R  + L  GV + L  ERSG+ + + Y+ G+R ++ E L+   
Sbjct: 177 KYFDSPTIPMGELEHILRSKAVLLPGVAVTLHIERSGETKEWAYKDGMRGYLAELLDGTD 236

Query: 235 TAVNQVFHFNIQRE--------DGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 286
             +  +       +        +G G   A+ W +        + N IP   GGTH  G 
Sbjct: 237 LVIPMIVGEKYAGKPTNGDGFAEGEGAAWAIAWTEEGALARESYVNLIPTPGGGTHESGL 296

Query: 287 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 346
           R  + + + ++++   L  K  V    +D     + ++S ++ DP F  QTKD+L S + 
Sbjct: 297 RDGIFQAVKSFVDMHSLLPKG-VKLLPEDVFGRASFLLSARILDPSFQGQTKDRLNSRDA 355

Query: 347 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 406
              V       F  +L E+    K +    I  A++R+  R A+++ ++KG+  +A LPG
Sbjct: 356 VKLVSAMFRDTFELWLNEHVEYGKKLAELSIKQAQSRQ--RSAQKVEKKKGS-GVAVLPG 412

Query: 407 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 466
           KL DC+  D   +EL+LVEGDSAGGSAKQGR++  QA+LPL+GK+ N  +   D++ ++ 
Sbjct: 413 KLTDCESDDIERNELFLVEGDSAGGSAKQGRDKEFQALLPLRGKVQNSWEVEPDRLYANV 472

Query: 467 EVGTLITALGCG--IGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIE 524
           E+  +  A+G        + +ID LRY  +IIM+DADVDGSHI+ LLLT FFR  P+LI 
Sbjct: 473 EIHNIAVAIGVDHHTLESDTSIDGLRYGKVIIMSDADVDGSHIQCLLLTLFFRHFPKLIA 532

Query: 525 RGYIYIAQPPLYKV 538
            G IY+A+PPL++V
Sbjct: 533 NGNIYVAKPPLFRV 546



 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 5/81 (6%)

Query: 719 EFKEALDWLMAESTKRH--TIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQ 776
           E +   D L+ E  K    +I R+KGLGEM+ +QLW+TT++P  RR++RV   D    + 
Sbjct: 567 ELEAVKDKLVKEGIKLEALSISRFKGLGEMSSEQLWDTTLNPDTRRLVRVEFGDYPMEET 626

Query: 777 I--FNTLMGDA-VEPRRDFIE 794
           I   N LMG      RR+++E
Sbjct: 627 IAKMNMLMGKGEASSRREWLE 647