Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 830 a.a., DNA gyrase, B subunit from Dechlorosoma suillum PS

 Score =  893 bits (2308), Expect = 0.0
 Identities = 478/838 (57%), Positives = 594/838 (70%), Gaps = 43/838 (5%)

Query: 1   MSEEN-----------TYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNS 49
           MSEEN            Y  +SI++L+GL+AVRKRPGMYIGDT DG+GLHH+VFEVVDNS
Sbjct: 1   MSEENPQMNTPQEGAPAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60

Query: 50  IDEALAGHCDDISIIIHPDESITVRDNGRGIP----VDVHKEEGVSAAEVIMTVLHAGGK 105
           IDEALAGHCDDI++ IH D SI+V DNGRGIP    +D   E   SAAE+ +T LHAGGK
Sbjct: 61  IDEALAGHCDDITVTIHADNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGK 120

Query: 106 FDDNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPKE----------- 154
           F+ NSYKVSGGLHGVGVS VNALS+ L LT+RR GK     +  GVP E           
Sbjct: 121 FNQNSYKVSGGLHGVGVSCVNALSKWLRLTIRRDGKRHFIEFNRGVPVERVIEVRDGFEV 180

Query: 155 -PMKIVGDSETTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGK 213
            P+K++GD++  GT++HF    E F  + F ++ILAKR+RELSFLN+GV I L D+R+GK
Sbjct: 181 SPLKVLGDTDKRGTEVHFLADDEIFGTVEFHYEILAKRLRELSFLNNGVSIRLVDQRNGK 240

Query: 214 EELFKYEGGLRAFVEYLNTNKTAVN-QVFHFNIQREDG-----IGVEIALQWNDSFNENL 267
           EELF + GG+++FVEY+N  K+ ++  +F+   + + G     IGVE+A+QWNDS+ E +
Sbjct: 241 EELFAFAGGVQSFVEYINRTKSVLHPSIFYSAGEAKVGDTGVTIGVEVAMQWNDSYQEQV 300

Query: 268 LCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVK 327
           LCFTNNIPQ DGGTHL G R+A+TR +N YIE   +AKK KV  TGDD REGL  ++SVK
Sbjct: 301 LCFTNNIPQSDGGTHLTGLRAAMTRIINKYIEENEIAKKAKVEITGDDMREGLACVLSVK 360

Query: 328 VPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAAR 387
           +PDPKF+SQTK KLVSSE + AVE+ +    ++FLLE P +AK + GK+++AARAR+AAR
Sbjct: 361 MPDPKFASQTKMKLVSSEARPAVEEVVAAKLTEFLLERPVDAKTICGKIVEAARARDAAR 420

Query: 388 KAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPL 447
           KAREMTRRKG LD  GLPGKLADCQEKDP   ELYLVEGDSAGGSAKQGR+R+ QAILPL
Sbjct: 421 KAREMTRRKGILDGVGLPGKLADCQEKDPTQCELYLVEGDSAGGSAKQGRDRKFQAILPL 480

Query: 448 KGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHI 507
           KGKILNVEKARFDK+ISSQE+ TLITALG GIG+DEY  +KLRYH IIIMTDADVDG+HI
Sbjct: 481 KGKILNVEKARFDKLISSQEIATLITALGTGIGKDEYKPEKLRYHRIIIMTDADVDGAHI 540

Query: 508 RTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDDAMEEYMTQSALEDASL 567
           RTLLLTFF+RQ+PEL+ERG+IYIAQPPLYKVK GK E+Y+KDD   ++++ Q A+E   L
Sbjct: 541 RTLLLTFFYRQMPELVERGHIYIAQPPLYKVKHGKTERYLKDDHEYQQFLLQMAMEGTEL 600

Query: 568 HLNDEAPGISGESLERLVNDFRMVMKTLKRLSRLYPQELTEHFIYLPAVSLE-QLGDHAA 626
                A  ISG +LE L  ++ +    + RLS     E+    ++    +LE +L D AA
Sbjct: 601 LPRAGAEPISGAALESLAREYLLAEAVINRLSNHINPEVLHALVH---HNLELKLDDEAA 657

Query: 627 MQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSN 686
            +   A     L  V   G+   A   E +E   W   +E + HG     + + DF  S 
Sbjct: 658 AKASAA----LLAKVSSDGIDVFAHYNEAQES--WQVRMEKMHHGNRKVSSIDEDFLRSG 711

Query: 687 DYKTVVTLGAQLSTLLDDGAYIQRGERKKQVKEFKEALDWLMAESTKRHTIQRYKGLGEM 746
           DY  +      L+ L   G  IQRGE+K  V +F   + WL+ E  K  + QRYKGLGEM
Sbjct: 712 DYLQLRKTAELLNGLFGPGGLIQRGEKKMAVADFASTMTWLLNEVEKGISKQRYKGLGEM 771

Query: 747 NPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804
           NP+QLWETTMDP  RR+LRV I+DAIGAD++F TLMG+ VEPRR+FIESNAL   N+D
Sbjct: 772 NPEQLWETTMDPNVRRLLRVGIDDAIGADEVFTTLMGELVEPRRNFIESNALRAQNID 829