Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1151 bits (2977), Expect = 0.0
 Identities = 566/802 (70%), Positives = 665/802 (82%), Gaps = 1/802 (0%)

Query: 4   ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISI 63
           EN+YDS+SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMVFEVVDNSIDEALAGHC DI+I
Sbjct: 3   ENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITI 62

Query: 64  IIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 123
            IH D S++V+D+GRGIPV +H+EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS
Sbjct: 63  TIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 122

Query: 124 VVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETTGTQIHFKPSAETFKNIHF 183
           VVNALS++L LT+RR GK+ EQ Y HGVP  P+K +GD+  TGT+I F PS +TF N+ F
Sbjct: 123 VVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATKTGTEIRFWPSEQTFSNVEF 182

Query: 184 SWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQ-VFH 242
            ++ILAKR+RELSFLNSGVGI L DER  K E FKYEGG+ AFV+YLN NKT VN+ VFH
Sbjct: 183 HFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFVDYLNRNKTPVNKDVFH 242

Query: 243 FNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEG 302
           F  +R+DGI VE+A+QWND + EN+ CFTNNIPQRDGGTHL GFRSALTRNLN Y+E EG
Sbjct: 243 FMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEG 302

Query: 303 LAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFL 362
             KK K   TGDDAREGLTA+ISVKVPDPKFSSQTKDKLVSSEVK AVEQ MG+  +D+L
Sbjct: 303 YNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYL 362

Query: 363 LENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELY 422
           LENP +AKL+VGK++DAARAREAARKAREMTRRKGALD+ GLPGKLADCQEKDP LSE+Y
Sbjct: 363 LENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIY 422

Query: 423 LVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 482
           +VEGDSAGGSAKQGRNR+ QAILPLKGKILNVEKARFDKM+SSQEV TLITALGCGIGRD
Sbjct: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482

Query: 483 EYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGK 542
           EYN DK RYHNIIIMTDADVDGSHIRTLLLTFFFRQ+PELIERGY+YIAQPPL+KVKKGK
Sbjct: 483 EYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKGK 542

Query: 543 QEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKTLKRLSRLY 602
           QEQY+KD+ A+ +Y+T  AL+  S++ +  APG+SGE LERLV  +R V   + RL + Y
Sbjct: 543 QEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVARLEQRY 602

Query: 603 PQELTEHFIYLPAVSLEQLGDHAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWL 662
           P  +T   +Y P +S + L D A M++W+  +   L  +E SG++Y      D ER V+L
Sbjct: 603 PTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVLDPERKVYL 662

Query: 663 PEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERKKQVKEFKE 722
           P++ +  HG+  +  F+ DFF S DY+ +  LGA L  L++ G Y+QRG+R K+V  F E
Sbjct: 663 PKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEVGSFIE 722

Query: 723 ALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLM 782
           ALDW ++E+ +   IQRYKGLGEMNP+QLWETTMDP  RRML+VTI+DA+GADQ+F  LM
Sbjct: 723 ALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTCLM 782

Query: 783 GDAVEPRRDFIESNALAVSNLD 804
           GD VEPRR+FIE+NAL V+NLD
Sbjct: 783 GDQVEPRREFIEANALNVANLD 804