Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 631 a.a., DNA topoisomerase IV subunit B from Klebsiella michiganensis M5al

 Score =  373 bits (957), Expect = e-107
 Identities = 219/546 (40%), Positives = 321/546 (58%), Gaps = 13/546 (2%)

Query: 4   ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISI 63
           +++Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAGH   + +
Sbjct: 3   QSSYNADAIEVLTGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHAKRVEV 58

Query: 64  IIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 123
           I+H D+S+ V D+GRG+PVD+H EEGV A E+I+  LHAGGKF + +Y+ SGGLHGVG+S
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 118

Query: 124 VVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVG--DSETTGTQIHFKPSAETFKNI 181
           VVNALS+ + + VRR G+I+   + +G   E + + G      TGT +HF P    F + 
Sbjct: 119 VVNALSKRVEVNVRRDGQIYSIAFENGDKVEDLHVTGTCGKRNTGTSVHFWPDESFFDSP 178

Query: 182 HFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQVF 241
            FS   L+  ++  + L  GV IV +D  +  E+ + Y  GL  ++         + +  
Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIVFRDLVNDSEQRWCYADGLTDYLSEAVNGLPLLPEKP 238

Query: 242 HFNIQREDGIGVEIALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSALTRNLNTYIEA 300
                  D   V+ AL W     E L   + N IP   GGTH+ G R  L   +  + E 
Sbjct: 239 FVGTFSGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 298

Query: 301 EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSD 360
             +  +  V  + +D  E    ++SVK+ DP+F+ QTK++L S +    V   +   FS 
Sbjct: 299 RNILPR-GVKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSL 357

Query: 361 FLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE 420
           +L +N   A+L+    I +A+ R   R A+++ R+K     A LPGKLADC  +D   +E
Sbjct: 358 WLNQNVQSAELLAEMAISSAQRR--LRAAKKVVRKKLTSGPA-LPGKLADCTAQDLNRTE 414

Query: 421 LYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG 480
           L+LVEGDSAGGSAKQ R+R  QAI+PLKGKILN  +   D++++SQEV  +  A+  GI 
Sbjct: 415 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GID 472

Query: 481 RDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKK 540
            D  ++ +LRY  I I+ DAD DG HI TLL   F R    L++ G++Y+A PPLY++  
Sbjct: 473 PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKHGHVYVALPPLYRIDL 532

Query: 541 GKQEQY 546
           GK+  Y
Sbjct: 533 GKEVYY 538



 Score = 48.9 bits (115), Expect = 9e-10
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 9/64 (14%)

Query: 737 IQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLMGDAV------EPRR 790
           +QR+KGLGEMNP QL ETT+DP  RR++++ I D    D+   T M D +      E RR
Sbjct: 561 VQRFKGLGEMNPLQLRETTLDPNTRRLVQLIIND---EDEQQTTAMMDMLLAKKRSEDRR 617

Query: 791 DFIE 794
           ++++
Sbjct: 618 NWLQ 621