Pairwise Alignments

Query, 388 a.a., RNA-directed DNA polymerase from Pseudomonas simiae WCS417

Subject, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 38/299 (12%)

Query: 67  TEAYNVFKLRKANVGHSPDRFRWICAPSEDLLRVQRWINVHILSKVDPHEASYAYDKRHG 126
           + AY V+ + K   G      R I  PS  L   QR +N  +   +  H++SYAY K   
Sbjct: 38  SHAYKVYSIPKRKAGR-----RTIAHPSSKLKICQRHLNAILNPLLKVHDSSYAYVKGRS 92

Query: 127 VLEAAVLHCGAEWLIKLDLTNFFESILEPRVYKLFRSFGYQPLVAFELARLCTRVRKSGN 186
           + + A++H  + +++K+D  NFF SI  P + +         L   EL +L   +    N
Sbjct: 93  IKDNALVHSHSAYVLKMDFQNFFNSI-TPTILRQCLIQNDILLSVNELEKLEQLI--FWN 149

Query: 187 PD-RRFGNTTLPVGLPYSGDPRIGHLPQGAATSPRVANLVMQSLDENLQEYARENELVYS 245
           P  +R G   L VG P                SP ++N +M   D+ + +   ++ + Y+
Sbjct: 150 PSKKRNGKLILSVGSP---------------ISPLISNAIMYPFDKIINDICTKHGINYT 194

Query: 246 RYADDLVFSSKNAFDRSQVALHIKMINACLIKEGFWLNEAKTKIIPPGARKIVLGLLVDG 305
           RYADD+ FS+      +++   ++ +          +N+ KT        + V G+ +  
Sbjct: 195 RYADDITFSTNIKNTLNKLPEIVEQLIIQTYAGRIIINKRKTVFSSKKHNRHVTGITLTN 254

Query: 306 D-RPRLTKSYKKYVTDHLYYLAHPNIDAMTHARHRGFQSLQGLINHVSGKIAYGFSVEP 363
           D +  + +S K+Y++  ++   + N+D                INH+ G +A+ +++EP
Sbjct: 255 DSKISIGRSRKRYISSLVFKYINKNLDI-------------DEINHMKGMLAFAYNIEP 300