Pairwise Alignments

Query, 424 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 90/354 (25%), Positives = 150/354 (42%), Gaps = 30/354 (8%)

Query: 59  PMMPALSHEFSINAAQSSLILSVSTAMLALGLLITGPISDTLGRKPVMVAALFCAAFATI 118
           P MP ++ +F +NA    + L+  TA  A+G L+ GP++D+ GR+PVM+  +F    A +
Sbjct: 38  PAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHGPLADSFGRRPVMLCGIFLFGIAAM 97

Query: 119 ASGLMPSWEGILFMRALVGLSLSGLAAVAMTYLSEEIHPQHIGLAMGLYIGGNAIGGMSG 178
            S      E + ++RA  G + +  A V    + +    +    AM        +  +  
Sbjct: 98  VSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDMFDREDFARAMSFVTLVVTLAPLVA 157

Query: 179 RLIIGVLIDFVSWHTAMLIIGAL-ALIAATVFWKILPESRNFRASSLKPRSLVDSFVMHF 237
            +I G L  +  W +   ++    AL+ A V WKI           L+ RS + ++    
Sbjct: 158 PMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIPETLSPENRQPLRFRSTMRNYFDLC 217

Query: 238 KD-AGLPWLFLEAFLLMGAFVTMFNYIGYRLLADPYDLSQAVVG-LLSLVYLSGIYSSAK 295
           K+   +  +F  AF   G F   F   G  +  D Y +S    G L  L  ++ I  +  
Sbjct: 218 KNPVAMGLIFSGAFSFAGMFA--FLTAGAFVYIDIYGVSPDGFGYLFGLNIVAMIALTTI 275

Query: 296 IGSLADRLGRRRVL-WATIVLMLAGMLL----TLFSPLWLVVPGMLIF--TFGFFGAHSV 348
            G    ++G   +L +A  + ++AG+ L     L   LW  VP +++F  T    G++S+
Sbjct: 276 NGRFVKKIGSHNMLRFALFLQLMAGIGLFVSWVLDWGLWGTVPFVVLFVGTISTIGSNSM 335

Query: 349 ASSWIGRRAVKAKGQASSLYLFCYYVGSSIAGTAGGFFWHFAGWNGIGAFIVAL 402
                        G   S Y       SS+AGT       F   + IGA + AL
Sbjct: 336 -------------GLLLSKYPRMAGTASSLAGTL-----RFGTGSIIGAVVAAL 371