Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  272 bits (695), Expect = 3e-77
 Identities = 174/469 (37%), Positives = 251/469 (53%), Gaps = 35/469 (7%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           F+   L E L+ A+    + +PTPVQ  AIP  L+GRDL V AQTG+GKT  F LP+L R
Sbjct: 3   FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 62  LI-----------GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGED 110
           L            GP + RV    L+L PTRELA Q  +  + +++     S  I GG  
Sbjct: 63  LFPNGHPDKSQRHGPRQPRV----LVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVG 118

Query: 111 FKVQAAMLRKVPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLV 170
              Q   + +  D+L+  PGR+++    G++DL  VE+LVLDEADRMLDMGF  DV++++
Sbjct: 119 MNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVL 178

Query: 171 SECVNRQQTMLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHK 230
           +    ++Q +LFSAT     + ++  K+L+NPE ++V   +       Q++     + HK
Sbjct: 179 ARLPAKRQNLLFSATFS-KDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPAS-HK 236

Query: 231 EQILNWLLANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLK 290
             +L  L+    +++ +VFT T+  A+R+   L      A  +HG K Q  R  A+   K
Sbjct: 237 RALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFK 296

Query: 291 AGGVKILVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHG 350
           AG V+ILVATD+AARGLD+D L  V+NF++P   ++YVHRIGRTGRAG  G AISL+   
Sbjct: 297 AGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPD 356

Query: 351 DWNLMSSIERYLKQ--------SFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKTDAKG 402
           +  L+ SIER  KQ         F+  TI+  K        V+    A G        +G
Sbjct: 357 EEKLLKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARG-------PRG 409

Query: 403 D-KKKTGAKSPTKRKIANRPKTDNLSLVSKDGMAPLKRRKPE--APAAE 448
           D    +G     K K  ++ K  + S  +  G  P + +KP    PA E
Sbjct: 410 DGPNGSGGGGGRKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPARE 458