Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  290 bits (742), Expect = 6e-83
 Identities = 164/375 (43%), Positives = 237/375 (63%), Gaps = 6/375 (1%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           FSQ  L  RLL  ++EL    PTP+Q  AIP  L+G+D+   AQTG+GKTAAF LP++ R
Sbjct: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 62  LIGPAKVRVS----IKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAM 117
            I     R +    I+ L+L+PTRELAQQ L  ++ +++ T +K   + GG   KVQ   
Sbjct: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127

Query: 118 LRKVPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQ 177
           LR   DILI TPGR+++  +  +L L +VEVLVLDEADRMLDMGF  D+QR++      +
Sbjct: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187

Query: 178 QTMLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWL 237
           QT+ FSAT   S ++ +  +++ +P  +QV   S+  A T QQ+V       K ++L++L
Sbjct: 188 QTLFFSATFD-SKIKAVAYRIMRDPIEVQVTP-SNSTAETVQQMVYPVDKKRKRELLSYL 245

Query: 238 LANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKIL 297
           + ++ +Q+ +VFT TR  +D +   L     KA  ++G+K Q  R+ A+D  KAG V+ L
Sbjct: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305

Query: 298 VATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSS 357
           +ATDVAARGLD+  L+ V+N+DMP   ++YVHRIGRTGRAG  GLA+SL+ H +   + +
Sbjct: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365

Query: 358 IERYLKQSFERRTIK 372
           IER L     +  +K
Sbjct: 366 IERLLNTRLPQEWLK 380