Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  265 bits (677), Expect = 2e-75
 Identities = 165/446 (36%), Positives = 247/446 (55%), Gaps = 10/446 (2%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           F+   L   +LKA+ E  +  P+P+Q  AIP  L G+D+   AQTG+GKTA F LP+L  
Sbjct: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query: 62  LIGPAKVRVS-IKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120
           L    KVR + ++ LIL PTRELA Q    V  + +   +KS ++ GG     Q   + K
Sbjct: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122

Query: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180
             DIL+ TPGR+++  N   +   ++E+LVLDEADRMLDMGF  D+ +++     ++Q +
Sbjct: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182

Query: 181 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN 240
           LFSAT   + +RE+   ++NNP  + V+  +    T  Q I  AD    K  +L  L+  
Sbjct: 183 LFSATFS-TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVK-KKPDMLVKLVKE 240

Query: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
             +Q+ +VF  T+  A+R+   L  Q   A  +HG K Q  R  A+   KAG V+ILVAT
Sbjct: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300

Query: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
           D+AARG+D+  L  V+NF++P+  ++YVHRIGRTGRAG  G AISL+   +   + +IER
Sbjct: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360

Query: 361 YLKQSFERRTIKEVKGTYTGPKKVKASGKAVGVKK----KKTDAKGDKKKTGAKSPTKRK 416
             +    R  +   + T   P+  K   + +  KK    KK +  G+ K  G+ +  K K
Sbjct: 361 LTQALLPRVNLAGFEPTNQLPES-KLDTRPLKPKKPKKPKKVEGAGENK--GSVAENKPK 417

Query: 417 IANRPKTDNLSLVSKDGMAPLKRRKP 442
             +R +    +  +K G    + +KP
Sbjct: 418 AGHRGQPTGQARTAKKGGTHSEPKKP 443