Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  288 bits (736), Expect = 3e-82
 Identities = 171/440 (38%), Positives = 252/440 (57%), Gaps = 17/440 (3%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           F    L  RLLK +A   F + T +Q  AIPL + GRDL  +++TGSGKT AFVLP+L++
Sbjct: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66

Query: 62  -LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120
            L   A      + LIL+PTRELA+Q   E+          + +ITGGE+F  Q   L +
Sbjct: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126

Query: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQ-QT 179
            P  ++ TPGR+ + L+  +L L+ +E LVLDEADRMLD+GFA +++R+ +   +R+ QT
Sbjct: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186

Query: 180 MLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLA 239
           ++FSAT   + + +M  ++LN P+ + +   S+ +    Q     DH  HKE +L+ +LA
Sbjct: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246

Query: 240 NETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVA 299
           +  Y++ I+FT TRA  DR+  +L     KA  L G  +Q  R   + + +    KILV 
Sbjct: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306

Query: 300 TDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIE 359
           TDVA+RGLD+  +  VINFDMP+  +EYVHR+GRTGRAGN G A+SL+   DW     +E
Sbjct: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366

Query: 360 RYLKQSFERRTIKEVKGTYTGPKKVKASGKAV---GVKKKKTDAKGDKKKTGAKS----- 411
            +L+Q  +   +  ++G + G K  +A  KA     V K K  +K  K     KS     
Sbjct: 367 AFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDKSFYQNV 426

Query: 412 -------PTKRKIANRPKTD 424
                    K+K+A +P+ D
Sbjct: 427 AVGDSVFIPKKKVAPKPEVD 446