Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

 Score =  291 bits (746), Expect = 2e-83
 Identities = 175/419 (41%), Positives = 241/419 (57%), Gaps = 7/419 (1%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           F+   L   LL+A+ E+ F  PT VQA AIP AL+GRD+  +A TG+GKTAAFV+P L  
Sbjct: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64

Query: 62  LIG-PAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120
           L+  P +     + LIL PTRELA Q  ++ +  ++ T +    ITGG  ++  A +L  
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180
             DI++ TPGR++E ++A   D + +E L+LDEADRMLDMGF   V RL +EC  R+QT+
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184

Query: 181 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN 240
           LFSAT  G  +    A +L +P H+             Q    AD   HK ++L  +L  
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTE 244

Query: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
           +  +++IVF  TR     +   L   +     + GE  Q  R  AI R + G V IL+AT
Sbjct: 245 QA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303

Query: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
           DVAARG+DV  +  VINFD+PRS D Y+HRIGRTGRAG  G+AISL+   D  +M+ +ER
Sbjct: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363

Query: 361 YLKQSFERRTIKEVKGTYTGP--KKVKASGKAV---GVKKKKTDAKGDKKKTGAKSPTK 414
           Y+K+  + R I  ++  +  P  KK K   K     G  KKKT +K   K T  K+ TK
Sbjct: 364 YIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATK 422