Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 420 a.a., ATP-dependent RNA helicase SrmB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  289 bits (740), Expect = 1e-82
 Identities = 175/425 (41%), Positives = 241/425 (56%), Gaps = 10/425 (2%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           F  F L   LL+++  +  + PT +Q   +P ALE RD+   A TG+GKTA+F+LP L  
Sbjct: 3   FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query: 62  LIG-PAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120
           LI  P +     + LIL PTRELA Q  +     +    +   IITGG  +  Q   L+ 
Sbjct: 63  LIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122

Query: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180
             DIL+ TPGR++E L+ G    + V++L++DEADRMLDMGF+  V+ +  E   R+Q M
Sbjct: 123 NIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182

Query: 181 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN 240
           LFSAT  GS +     +VLN+P  + V+      A   Q I  AD   HK  +L  LL  
Sbjct: 183 LFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQ 242

Query: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
           E  ++AIVF  TR     + G+L+        + G+ +QK R  A+ R   G V +L+AT
Sbjct: 243 EDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLAT 302

Query: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
           DVAARG+D+D +  VINFDMPRS D Y+HRIGRTGRAG  G AISL    D  ++  IER
Sbjct: 303 DVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKIER 362

Query: 361 YLKQSFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKTDAKGDKKKTGAKSPTKR--KIA 418
           Y++Q  +RR I+E++     PK  +A  +    KK K  AK   KKT  K   K+  KIA
Sbjct: 363 YIEQPLKRRIIEELR-----PKHKEA--RVPTKKKAKVKAKEAAKKTSKKEAAKKASKIA 415

Query: 419 NRPKT 423
            + ++
Sbjct: 416 RKKQS 420