Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 449 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  309 bits (792), Expect = 1e-88
 Identities = 182/447 (40%), Positives = 266/447 (59%), Gaps = 12/447 (2%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           F+ F+L +RLL+++  +    PT +Q  A+P+AL G+DL  +++TGSGKT AF+LP + R
Sbjct: 3   FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAMQR 62

Query: 62  LIGP-AKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120
           +I   A  +   + LILLPTRELA Q   ++      T  K+  + GGE+F  QA  L K
Sbjct: 63  VISTRALTKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK 122

Query: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVN-RQQT 179
            P  ++ TPGR+ + L   NL L  +E+LVLDEADRMLD+GFA  ++ + +   + R+QT
Sbjct: 123 EPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRRQT 182

Query: 180 MLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLA 239
           ++FSAT   S + E+ A +L NP H+ +      +    Q+I   DH  HKE +L  LL+
Sbjct: 183 LMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTRLLS 242

Query: 240 NETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVA 299
           +ET+++ I+FT TRA  +R+  +L AQ +    L GE  Q  R   +D+   G  +ILV 
Sbjct: 243 DETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVT 302

Query: 300 TDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIE 359
           TDVA+RGLD+  + LVINFDMP+  +EYVHRIGRTGRAG  G AISL+   DW+    ++
Sbjct: 303 TDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQ 362

Query: 360 RYLKQSFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKTDAKGDKKKTGAKSPTKRKIAN 419
            +L+++FE   I+ ++  ++G K    +     V K      G K K   KS T +  A+
Sbjct: 363 LFLRKTFEISVIQGLEAKFSGLKDKPKTAATKAVTK-----AGTKTKAKTKSKTVKTAAS 417

Query: 420 RPKTDNLSLVSKD-GMAPLKRRKPEAP 445
           R   D   +   D G AP+ R+KP AP
Sbjct: 418 R---DKRFITGVDVGDAPM-RKKPAAP 440