Pairwise Alignments

Query, 747 a.a., (p)ppGpp synthetase from Pseudomonas simiae WCS417

Subject, 735 a.a., GTP pyrophosphokinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  716 bits (1847), Expect = 0.0
 Identities = 368/749 (49%), Positives = 504/749 (67%), Gaps = 21/749 (2%)

Query: 1   MVQVR-AHQPINTDGSINLEAWLDHAIS-VDPALDREALKAACEFARESEQQDNASKNLW 58
           MV VR AH     D   +LE W+   +S VD A    AL A         Q D       
Sbjct: 1   MVSVREAHF---NDPDFHLEEWVARYVSHVDEAQTLLALIA---------QVDALPAKSP 48

Query: 59  AEGTSSFRTGLEIAEILADLKLDQDSLIAAVLYRGVREGHIQLATVGQRFGSVVAKLIDG 118
           A          E+ EILA L +D ++L AA+L+     G +    + ++FG  +A+L+  
Sbjct: 49  AAKRELLEHAREMIEILAPLNMDIETLQAAILFVVFDAGLLNEEAIKEKFGEPLARLVAS 108

Query: 119 VLRMAAISA-SLSPRQSMVLGTQGQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTA 177
           V+ M AI A  ++P       T+ Q++N+R+ML+AMV+DVR  +IKLAER C +RAVK A
Sbjct: 109 VVTMNAIGALKINPNSR---STEPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNA 165

Query: 178 DDEKRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQIATLLHERRLDRE 237
           D+E R  +ARE+ DIYAPLA+RLGIG +KWELED+SFRYL PD YK+IA  L  +RLDRE
Sbjct: 166 DEETRVLLAREIADIYAPLANRLGIGQLKWELEDISFRYLHPDTYKEIAKQLDGKRLDRE 225

Query: 238 RFITDVMNQLRSELQATGVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLVPEM 297
            FI + + QL+  L    + A + GR KHIYSIWRKM+ K L F +++DVRAVR++   +
Sbjct: 226 VFIENFVEQLQQRLDEDHIRAKVYGRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTERL 285

Query: 298 RDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEE 357
           +DCY ALG+VHTLW HIP+EFDDY+ANPK NGY+S+HT V+GPEGK +E+QIRT  MHE+
Sbjct: 286 QDCYGALGVVHTLWHHIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHED 345

Query: 358 AELGVCAHWRYKGTDVKAGSNQYEEKISWLRQVLEWHEELGDIGGLAEQLRVDIEPDRVY 417
           AELGV AHW+YK  +     + YEEKI+WLR++L+W E++ + G L E++R  +  DRVY
Sbjct: 346 AELGVAAHWKYKEGNHSGKQSGYEEKINWLRKILQWQEDVVESGNLVEEVRSQVFEDRVY 405

Query: 418 IFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYSLQTGEQVEIITSK 477
           +FTP G  +DLP G+T LDFAY +H+++GH C GAK++GRIVP  Y ++TGE++EIITSK
Sbjct: 406 VFTPSGEVVDLPLGSTVLDFAYYIHSQVGHKCIGAKVDGRIVPFTYQVETGERIEIITSK 465

Query: 478 HGTPSRDWLNPNLGYITTSRARAKIVHWFKLQARDQNVAAGKTLLERELGRLGLPQVDFD 537
           H  P RDWLNPNLGYI TSRAR+KI HWFK Q RD+N+ AGK +LE EL R+ L   D  
Sbjct: 466 HPNPKRDWLNPNLGYIRTSRARSKIQHWFKQQDRDKNIIAGKEMLEAELARVSLRIKDAT 525

Query: 538 KLAEKANMKIAEDMFAALGAGDLRLAQLVNLAQQLVEPERGSEQ---LELIPRKATGYKP 594
              E+ NM   +D+ AA+G GD+RL Q+VN  Q  +  +  SE+    EL+ +  +    
Sbjct: 526 IAVERFNMASMDDLLAAIGGGDVRLHQVVNHIQSKLRLDEASEEDAVEELVKKSQSKSGT 585

Query: 595 GKRGDIQIQGVGNLMTQIAGCCQPLPGDAIVGYITQGRGVSIHRQDCASVLQLGGREPER 654
             RG +++ GVGNL++ IA CCQP+PGD I+G+IT+GRG+S+HR DC  V +L    PER
Sbjct: 586 NSRGQVEVNGVGNLLSHIARCCQPVPGDEILGFITKGRGISVHRSDCEQVKELMRVHPER 645

Query: 655 IIQVSWGPVPVLTYPVDIIIRAYDRSGLLRDVSQVLLNERINVLAVNTRSNKEDNTALMS 714
            + V WG      Y + + + A+DRSGLLRD++ VL  E+ NVLA+++ S+ ++ TA + 
Sbjct: 646 GVDVVWGENYSGGYRMRLRVLAHDRSGLLRDLTSVLAAEKSNVLAMSSSSDIKNQTAAIE 705

Query: 715 LTIEIPGLDALGRLLGRISQLPNIIETRR 743
           L +E+  LD L R+L ++SQ+ ++IE RR
Sbjct: 706 LELELYNLDGLSRVLSKLSQVDSVIEARR 734