Pairwise Alignments

Query, 357 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (359), Expect = 1e-38
 Identities = 90/318 (28%), Positives = 168/318 (52%), Gaps = 12/318 (3%)

Query: 18  VFVFLLHSILTPFLVALLLAYLFDPVVDRLEKAGLSRTWGVVAVFALFTLIITALVLVLV 77
           + ++    ++ P LVA++LAYL +  V +L +  + RT  V+ V  +FT ++   V  LV
Sbjct: 30  ITIYFFGHLIAPLLVAIVLAYLLEWPVTQLRRLRIPRTLAVIIVITVFTGLMILAVFGLV 89

Query: 78  PMLAKQLFRLYELAPQMLDWLQH--TAMPWAQAKLGLADGFWKFDKVKAAISEHMGQTTD 135
           P + KQ+  L    P M +  Q   T++P    +L         + V++ I     +   
Sbjct: 90  PTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELA------HLEIVESVIGNAKNKVLG 143

Query: 136 IVGVVLSQATASSLALIGWLTNLVLIPVVAFYLLRDWDLMMAKIRSLLPRDREERIVSLA 195
           +   V+  + AS ++L      L+L+P++ F+LL+D   M+     +LPR+R+     + 
Sbjct: 144 MGESVVKGSLASLVSLATLGVYLILVPLLVFFLLKDKQEMLRMASGILPRNRK-LANKVW 202

Query: 196 EECHEVLGAFVRGQLLVMLALGIIYAAGLMAIGLELGLLIGLIAGLAAIVPYMGFVIGIG 255
           EE ++ +  ++RG++L ++ +G +       + L   +L+ +  GL+ ++PY+G      
Sbjct: 203 EEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLAVAVGLSVLIPYIGAAAVTV 262

Query: 256 AALVAGLFQFGGDLYPML-GIVAVFMVGQALEGMVLTPLLVGDRIGLHPVAVIFAILAGG 314
              +  LFQ+G  L P    ++  + + QAL+G VL P+L  + + LHPVA+I A+L  G
Sbjct: 263 PVAIVALFQWG--LTPQFYTLLIAYGIIQALDGNVLVPVLFSEAVNLHPVAIIIAVLVFG 320

Query: 315 ELFGFTGILLALPVAAVI 332
            L+GF G+  A+P+A ++
Sbjct: 321 GLWGFWGVFFAIPLATLV 338