Pairwise Alignments

Query, 429 a.a., Long-chain fatty acid transport protein from Pseudomonas simiae WCS417

Subject, 452 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella amazonensis SB2B

 Score =  190 bits (482), Expect = 9e-53
 Identities = 122/424 (28%), Positives = 206/424 (48%), Gaps = 44/424 (10%)

Query: 1   MKKVMLKTTLSLAVAMASSHIFASGFALNEQDVAGMGTGFAGRSSSAENASTVYGNPAGM 60
           MKK +L   +S A+   ++ + A+GF L E    G+G  FAG ++ A+NA+    NPA +
Sbjct: 3   MKKSVLTFAVSAALMGITTQVNAAGFQLAEYSATGLGRAFAGEAAMADNAAAQARNPAML 62

Query: 61  ARLEGQQVTGG----VAAIDASSNIKDVS------GRSSGTNKGDMVPFTAVPFGFYTNK 110
           A L G+QV+GG       +D + ++   S      G +   +  D+     +P  +Y+++
Sbjct: 63  AYLSGRQVSGGGIYVATEVDVTGDVHIASPVLGPQGVTLNADAYDVADSALIPNFYYSSQ 122

Query: 111 LNDQWAVGFGVYAPFGLVTDYESGFQGKAFGSKSEVTVITFQPTVSYAFNDRVSIGFGPT 170
           +ND W  G  V + +GL T+  +      FG  +E+T + F P ++Y  ND V++G G  
Sbjct: 123 INDNWTWGLAVNSNYGLATELPATHAASLFGHHTEITTVEFNPNIAYRLNDAVTLGAGVR 182

Query: 171 I-----------NRIAGTLESDINLP------VAGTGSNNIKIKGDDTAVGFNAGLLVQA 213
           I               G ++++ NLP      +   G+    ++GDD + G+  G   Q 
Sbjct: 183 IVYGDGSIGAATPYWVGAIKANPNLPAQIAARLPEPGTVLKTMEGDDVSYGWQVGGSWQP 242

Query: 214 TDTTRVGLTYHSKVKYKLEGHTE---VTKGTNVPASLLNNGRYDASLKIDTPESWDLSVT 270
           ++  R GL YHS V+ +L G       T G N+          +  L ++ P   +LS  
Sbjct: 243 SENHRFGLAYHSGVELELSGSAAGLVYTGGQNLDI--------EGYLPLELPAFAELSSF 294

Query: 271 QDMSDAWKLYAGATWTRWSRLKDITVNNEGVSAAAGSGVLAPQIVGTIKEDQNWHDTWAY 330
             +SD   L+A   WT+WS    +     G +   G       I   + +++N+ D+W  
Sbjct: 295 HQLSDDVALHASVNWTQWSVFDRLVAYFPGETKPVGG------IESDLVKEENFKDSWRV 348

Query: 331 AVGTSYRVTKQVVLRTGLTFDQSPTNNTDRSPRIPTGDRTIFSLGLGYDVMPNMTVDLAY 390
           AVG+++ V K   +R+G   D++  ++  R+  IP  DR  FSLG GY    N+TVD+A 
Sbjct: 349 AVGSTWNVNKDWTVRSGFAVDRTAVDDEFRTTTIPDSDRLWFSLGAGYRASENLTVDMAI 408

Query: 391 SYLK 394
           +Y++
Sbjct: 409 TYIR 412