Pairwise Alignments

Query, 492 a.a., recombinase RmuC from Pseudomonas simiae WCS417

Subject, 510 a.a., DNA recombination protein RmuC from Vibrio cholerae E7946 ATCC 55056

 Score =  369 bits (947), Expect = e-106
 Identities = 200/470 (42%), Positives = 305/470 (64%), Gaps = 28/470 (5%)

Query: 25  QLQRRLNARMTGWELLEERLATAQLAQEGLAAQLDASRDEIS-DLSQANAAKQADLAAVR 83
           QL+++ +      + L E+L TAQ   +    +LDA RD+   +L Q++    A L  +R
Sbjct: 43  QLEQQSHWHAQQIQQLNEQLTTAQQELD----ELDALRDKNEFELKQSHGKLMAVLEKLR 98

Query: 84  REVELLQIDRDNARDAAHAWNLDRSAKETELRRLDALSAALRAELREQQDSHQQRLTD-- 141
              E ++ +R    D              EL ++ A  A L ++LREQ+  HQQ+L    
Sbjct: 99  Y-FEAVKQERQQYAD--------------ELNQVRAAKAELESQLREQEARHQQQLVASQ 143

Query: 142 -----LQGSRDELRAQFAELAGKIFDEREQRFAETSQERLGQLLDPLKERIQSFEKRVEE 196
                L+ + + L+ QF  LA ++F+ +       +++ L  LL PLKE+++ F+K+V +
Sbjct: 144 EKLQLLERAEERLKQQFEHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQVND 203

Query: 197 SYQNEARERFSLAKELERLQQLNLRLSDEATNLTRALKGQ-KTQGNWGELILERVLEHAG 255
           S+ +EA+ER +L  EL  LQ+LN +++ EA NLT+ALKG  K QGNWGE++L RVL  +G
Sbjct: 204 SFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLTQALKGDNKQQGNWGEVVLARVLAESG 263

Query: 256 LEKGREYQTQVSLKGPDGERFQPDVLIMLPGDKQVVVDSKVSLTAYQQYVAAEDDVIGQA 315
           L +G EYQTQVSL+   G+R+QPDV++ LP +KQVV+DSK++L AY++Y  AE D    +
Sbjct: 264 LREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAETDSERDS 323

Query: 316 ALKQHVLSLRNHVKGLAGKDYKRLEGLHSLDFVLLFVPIEAAFSAALQAEPNLFQEAFDR 375
           AL++H+L+LRNH++GL  KDY +L+G+ SLD+VL+F+P+E AF  A+QA+P+L  +A ++
Sbjct: 324 ALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQ 383

Query: 376 HIVIVSPTTLLATLRVIDSLWKQERQSQNAREIAERAGWLYDKFVLFIQDLDEVGNRLQQ 435
           +I++VSPTTLL  LR ID+LW+ ERQ+QNA+ IAERA  LYDK  LF++D++ +G  L +
Sbjct: 384 NIILVSPTTLLVALRTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDK 443

Query: 436 LDKAYSAARNKLTDGRGNLVSRTEQLRLLGARASKSLPADLLERAMTDSD 485
            +++Y  A NKL  GRGN + + E  + LG    +S+P  L+ERA    D
Sbjct: 444 ANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIKRSIPQPLIERAQQAPD 493