Pairwise Alignments

Query, 294 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 305 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 94.4 bits (233), Expect = 3e-24
 Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 14/282 (4%)

Query: 14  ALMFGLTGVFGKLAAASPAVIVFGRAAFAVVALAVFARFASNTAWKTLELRDWRRLLVSG 73
           A++ G  G   + A    ++I F R       L  +   A+  A + L  R  +R L +G
Sbjct: 30  AILMGTIGALARTANLEASIITFYRLLIGAACLIAYM-LATGKARQILH-RPGKRHLFNG 87

Query: 74  VLLAAHWVTFFIAVKVAGVAVATLGFTAFPAFTVILEGLIFRERIRANEVMLVALVSVGL 133
            +LA   V +  ++    +A A +     P  + I    +F ER+   +++ + +  +G+
Sbjct: 88  AMLAGFMVFYVQSIGYINMANAVMLIYLAPLVSAIGAHFLFHERLTRQDLLAIGIALIGV 147

Query: 134 VLVTPDFNVASEATSGLL-WGIASGLLFSLLSLNNRASSGRIPA----VQAALCQNVVVA 188
           V + P     + +T+ L  +G A   L +LLS +      R PA     Q+ L Q    A
Sbjct: 148 VAILPSLESLTGSTAELKGYGFA---LLALLSYSGFMLINRRPASASPYQSTLIQLSFGA 204

Query: 189 VCLLPVAAPALADVRAIDWLWIGLLGVFCTGLAHSLFVASLAVIKARTASVVFAMEPVYG 248
           +CLLP A           W W+ L+GVF   LA    V +L V+ A T   +  +EPV  
Sbjct: 205 LCLLPFALHQAVMPSLTQWFWLALIGVFPGFLAILFAVKALRVLPAATFGTLAYIEPVTV 264

Query: 249 ITAAWLLFAETPTLRMLLGGALIIVAIVLSGLMGSASQAKQP 290
           +   W LFAE  T   L+G  LII A    GL+ +  + + P
Sbjct: 265 VILGWSLFAEHLTPMQLMGCGLIICA----GLIQTRKRRRAP 302