Pairwise Alignments

Query, 520 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas fluorescens FW300-N2E2

 Score =  383 bits (983), Expect = e-110
 Identities = 218/515 (42%), Positives = 311/515 (60%), Gaps = 17/515 (3%)

Query: 1   MRIKVHCQNRIGILRDILNLLVEYGVNVAKGEVGGEHGNAIYLFCPNLVNMQFQALRPQF 60
           MRI V   +R+GI +++L LL    +N+   E+   +   +Y+  P L       LR   
Sbjct: 1   MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPN---VYIDAPTLSPQVLDELREAL 57

Query: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALEFPVLSIDMGGSIVAANRAAAQLLGVRVD 120
            ++ GV  V  V ++P +RRH++L+ALL A+  PVL++D  G ++ AN A   L G    
Sbjct: 58  FSVRGVQAVTVVDILPGQRRHLQLDALLAAMTDPVLALDSAGKVLLANPALIALYG---R 114

Query: 121 EVPGIPLSRYAEDFDLPELVRASKSRINGLRVKVKGDVFLADIAPLQSSEHDDSEAMAGA 180
           E  G  ++    D  L + +  +  R+    + + G   L D  P+           AGA
Sbjct: 115 EPAGESVAELFGDEALLDALLENGFRLPLREITLNGQTLLLDATPITD---------AGA 165

Query: 181 VLTLHRADRVGERIYNVRKQELRGFDSIFQSSKVMAAVVREARRMAPLDAPLLIEGETGT 240
           +LTL++ +R+GER+  +      GFD++   S  +  +   A+R+A LDAPLLI+GETGT
Sbjct: 166 LLTLYQPNRIGERLSALHHDHAEGFDALLGESPAIRTLKARAQRVAALDAPLLIQGETGT 225

Query: 241 GKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELT 300
           GKEL+ARACH  S R  +P +ALNCA LPE++AE+ELFGY PGAF GA+  GK GL+EL 
Sbjct: 226 GKELVARACHAISARHGAPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLMELA 285

Query: 301 AGGTLFLDGVGEMSARLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARG 360
             GT+FLD +GEMS  LQ KLLRFL DG FRRVG D E+ ++VR++ AT  +L ++ + G
Sbjct: 286 NQGTVFLDEIGEMSPYLQAKLLRFLNDGSFRRVGGDREIKVNVRILSATHRNLEKMVSEG 345

Query: 361 EFRQDLYHRLNVLSLHIPPLRECLDGLAPLVDHFLDQASRQIGCPLPKLAPAAMDRLSHY 420
            FR+DL++RLNVL++ +PPLRE    +  L  +F+ QA  QI  P+ +LAP     L   
Sbjct: 346 SFREDLFYRLNVLNVEVPPLRERGQDILLLARYFMQQACAQIQRPVCRLAPGTYPALLGN 405

Query: 421 HWPGNVRQLENVLFQAVSLCEGGTVKVEHIRLPDYGVRQPLGDFSLEGGLEDIVGRFEKA 480
            WPGNVRQL+NV+F+A ++CE   V +  + +    V +  GD  +E  LE  V  FEK 
Sbjct: 406 RWPGNVRQLQNVIFRAAAICESSLVDIGDLDIAGTSVARQ-GDVEVE-SLEQAVENFEKH 463

Query: 481 VLEALYAEHSSSRQLGKRLGVSHTTIANKLRDYEI 515
           +LE+LY  + S+RQL  RL  SHT IA++LR Y I
Sbjct: 464 LLESLYVNYPSTRQLASRLQTSHTAIAHRLRKYGI 498