Pairwise Alignments

Query, 246 a.a., flagellar basal body rod protein FlgF from Pseudomonas simiae WCS417

Subject, 249 a.a., flagellar basal-body rod protein FlgF from Vibrio cholerae E7946 ATCC 55056

 Score =  227 bits (578), Expect = 2e-64
 Identities = 114/249 (45%), Positives = 169/249 (67%), Gaps = 3/249 (1%)

Query: 1   MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTE 60
           MD+ L++AM+GA QN  A +  ANNLAN+ST GF+ DL QARSM  +G+  P+R F+MTE
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE 60

Query: 61  RPATDFTPGAMIETGRDLDVAVNGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNGMP 120
           RP  +F  G++I TGRDLD+ + GDGW++V    G E   R+ ++ +D  G+L  GNG P
Sbjct: 61  RPGHNFAQGSVITTGRDLDITIQGDGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNGHP 120

Query: 121 IMG-NGGPIAVP-PQQKIEVGSDGTISIRAMGEGPRVMAEVDRIKLVQPDLKNMNKGLDG 178
           ++G  G PI +P P  K+E+G DGTIS+R  G     M  VDRIKLV+ + +++ K ++G
Sbjct: 121 VLGETGAPITLPVPLNKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRLNDQSLFKDVNG 180

Query: 179 TIHTKD-GQPAQADANVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAKEDDQ 237
                D     +ADA+VK+ +G L+ SNVNA+ EMT+++ L +QFE+ +KMM++A+E D+
Sbjct: 181 LFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEMDK 240

Query: 238 AMTRVMQMS 246
           A   +++ S
Sbjct: 241 ASDSLLRSS 249