Pairwise Alignments
Query, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417
Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056
Score = 106 bits (265), Expect = 2e-27
Identities = 92/354 (25%), Positives = 157/354 (44%), Gaps = 47/354 (13%)
Query: 127 LLQVNYAKAADLAKLFQSVTGLEGVTDERGS------------VAVDDRTNNIIAYQTVE 174
++ + YAKA DL ++ + V+ E + E+G+ +A TN+++ +
Sbjct: 268 VVYLKYAKAEDLVEVLKGVS--ENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQD 325
Query: 175 RLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGARWGGR-----LNRGNWGA--GG 227
+ + ++ QLDI QV+IEA IVE +LG +WG + GN GA G
Sbjct: 326 IMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGN 385
Query: 228 I------AKPPPEGAAPPEN----------PPPSPFVDLGS-LTGTSGLGIAYITDNLLL 270
+ AK + A + + L S L+ G ++ +
Sbjct: 386 VMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTA 445
Query: 271 DLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGATS------VSFKE 324
+ + + + N I+S P + D A + G E+P S++G+ + V KE
Sbjct: 446 LINAVSNDSSSN--ILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKE 503
Query: 325 ASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIG 384
+ L+V PQI + V + ++ N DV K ++N V+V+DG+ +V+G
Sbjct: 504 VGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVR-FAKRQLNTSVMVQDGQMLVLG 562
Query: 385 GVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNNQAIA 438
G+ + KVP LGD+P LG+LFR +K L+VF+ P I+ + A
Sbjct: 563 GLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTA 616
Score = 33.5 bits (75), Expect = 2e-05
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 126 ELLQVNYAKAADLAKLFQSVTGLEGVTDERGS-------VAVDDRTNNIIAYQTVERLEE 178
E++++N A AA++ ++ V L TD + + D+RTN+I+ + E
Sbjct: 192 EVVELNNASAAEMVRI---VEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRER 248
Query: 179 LRRIVAQLDI 188
L+R++ QLD+
Sbjct: 249 LKRLIKQLDV 258