Pairwise Alignments

Query, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417

Subject, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

 Score =  328 bits (841), Expect = 3e-94
 Identities = 180/416 (43%), Positives = 263/416 (63%), Gaps = 12/416 (2%)

Query: 27  GDKLSLNFQSIELRTALQQIADVAGLNLVASDDVQGSITLRLKDVSWDQALDLVLQAKGL 86
           G  +S+NFQ I +R  LQ IAD  G NLV SD V G++TLRL  V W Q LD++LQ KGL
Sbjct: 163 GKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGL 222

Query: 87  DKRVKAGVLLVAPAEELAARELLTLESRKQMAELAPLRRELLQVNYAKAADLAKLFQSVT 146
           DKRV   V+L+AP EEL  RE   LE  +   EL  L+ E++++N+AKA+D+A +     
Sbjct: 223 DKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGG-E 281

Query: 147 GLEGVTDERGSVAVDDRTNNIIAYQTVERLEELRRIVAQLDIPVRQVMIEARIVEANVDY 206
           G   +  ERGS+++D+RTN+++  +  + +  +R I+  LDIPV+QV IEARIV      
Sbjct: 282 GNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGN 341

Query: 207 DKSLGARWGGRLNRGNWGAGGIAKPP--PEGAAPPENPPPSPFVDLGSLTGTS------G 258
            + LG RWG     G+   GG  +     +G    +  P   F+++ +L  TS       
Sbjct: 342 LEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNV-NLASTSANASSIA 400

Query: 259 LGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGAT 318
             +A +    LLDLEL+A++     EI+S P+++T++K+ A I +GTEIPY ESSSSGA+
Sbjct: 401 FQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGAS 460

Query: 319 SVSFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNK--LNDVPPIKKNEVNAKVLVK 376
           +V+FK+A LSL+VTPQITPD+R+++++ VT+D      K    +   I    +  +VLV 
Sbjct: 461 TVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVN 520

Query: 377 DGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKSELLVFLTPRIM 432
           +GET+V+GG+F ++ +  VDKVP LGD+P LG LFRR      KSELL+F+TP+++
Sbjct: 521 NGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576