Pairwise Alignments

Query, 473 a.a., branched-chain alpha-keto acid dehydrogenase subunit E2 from Pseudomonas simiae WCS417

Subject, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

 Score =  196 bits (497), Expect = 1e-54
 Identities = 126/318 (39%), Positives = 184/318 (57%), Gaps = 30/318 (9%)

Query: 1   MALTVNTNIASITTQNGLGKAANSLQTSMQRLSTGLSINSAKDNASGLQISNRLTSQING 60
           MA+TVNTN++++  Q  L  A+  L  S++RLS+G  INSAKD+A+GLQISNRL +Q+ G
Sbjct: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60

Query: 61  LGQAVKNANDGISIAQTAEGAMQASTDILQKMRTLALSSATGSLSDADRTSNQEEYQALT 120
           LG AV+NANDGISI QTAEGAMQ +T +LQ+MR L+L SA GS S A+R + QEE  AL 
Sbjct: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120

Query: 121 SELTRISQTTTFGGQKLLDGSYGTKAIQVGANANETINLSLDNVAANNI--GSQQIKSVG 178
            EL RI++TT+F G+KLL+G +   + Q+GA++ E + LSL N+ ++++  G     +  
Sbjct: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAA 180

Query: 179 VAPSASGVAGG-----VIGITGNGQTNSVTVAA--GSSAKTIASQLNGAVGGLSASASTE 231
           +A     V  G     +  +   G+  ++ + A  G   + +A+ +NG    +SAS + +
Sbjct: 181 LADKQWQVTKGKQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKTDKVSASVNEK 240

Query: 232 AQFVVGAAAKTAPATFSMTVGGQTTTFTGVTDTASLADQLKSNAAKLGISVNFDEAKQSL 291
            Q  +  A K    T S         F+G     SLA++L+ N   LG      EA  +L
Sbjct: 241 GQLQLYIAGKETSGTLS---------FSG-----SLANELQMNL--LGY-----EAVDNL 279

Query: 292 SVKSDSGENLEFSAATAA 309
            + S  G     S    A
Sbjct: 280 DISSAGGAQRAVSVIDTA 297



 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 31/254 (12%)

Query: 231 EAQFVVGAAAKTAPATFSMTVGGQTTTFTGVTDTAS-LAD---QLKSNAAKLGIS-VNFD 285
           +A F +GA++  A       +   +    G +  A+ LAD   Q+     +L IS VN  
Sbjct: 144 KASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAALADKQWQVTKGKQQLNISYVNAQ 203

Query: 286 EAKQSLSVKSDSGENLEFSAATAAGSITVATKDGSGSYGSAVAIANGLKATGAVNLDSSK 345
              +++ +++  G+++E  A    G                       K + +VN     
Sbjct: 204 GENENIQIQAKEGDDIEELATYINGKTD--------------------KVSASVNEKGQL 243

Query: 346 GYALNGAGVTGLFAATGTAAASAKTS------VAQTDVTSAFNAQSAIAVIDKAIGGIDS 399
              + G   +G  + +G+ A   + +      V   D++SA  AQ A++VID A+  +D 
Sbjct: 244 QLYIAGKETSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTALKYVDG 303

Query: 400 VRSGLGAVQNRLTTTVDNLTNIQKNSTAARSTVQDTDFAAETAELTKQQTLQSAATAILS 459
            RS LGA+QNR    + NL N+ +N  A+ S ++D D+A ET ++ KQQ LQ  +T++L+
Sbjct: 304 HRSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTSVLA 363

Query: 460 QANQLPSAVLKLLQ 473
           QA + P  VL LL+
Sbjct: 364 QAKRQPKFVLFLLR 377