Pairwise Alignments

Query, 473 a.a., branched-chain alpha-keto acid dehydrogenase subunit E2 from Pseudomonas simiae WCS417

Subject, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

 Score =  210 bits (535), Expect = 6e-59
 Identities = 124/293 (42%), Positives = 176/293 (60%), Gaps = 11/293 (3%)

Query: 1   MALTVNTNIASITTQNGLGKAANSLQTSMQRLSTGLSINSAKDNASGLQISNRLTSQING 60
           MA+ VNTN+A++T Q  L  A N+ QTSM+RLS+G  INSAKD+A+GLQISNRL  Q  G
Sbjct: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60

Query: 61  LGQAVKNANDGISIAQTAEGAMQASTDILQKMRTLALSSATGSLSDADRTSNQEEYQALT 120
           L  AV+NANDGISIAQTAEGAM  +T+ILQ+MR L+L SA GS S ++R + QEE  AL 
Sbjct: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120

Query: 121 SELTRISQTTTFGGQKLLDGSYGTKAIQVGANANETINLSLDNVAANNI---GSQQIKSV 177
            EL RI++TT+FGG KLL+G++ TK+ Q+GA+  E + L+L ++ ++N    G+  + + 
Sbjct: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAE 180

Query: 178 G------VAPSASGVAGGVIGITGNGQTNSVTVAAGSSAKTIASQLNGAVGGLSASASTE 231
           G      V   A+ +   +  I GN QT +V    G   + +A+ +NG    + AS + +
Sbjct: 181 GKDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKASVNEK 240

Query: 232 AQFVV--GAAAKTAPATFSMTVGGQTTTFTGVTDTASLADQLKSNAAKLGISV 282
            Q  +  G    T    FS  + G      G  +T    D      A+  ++V
Sbjct: 241 GQLQIFAGNNKVTGDVAFSGGLAGALNMQAGTAETVDTIDVTSVGGAQQSVAV 293



 Score =  110 bits (276), Expect = 6e-29
 Identities = 97/320 (30%), Positives = 138/320 (43%), Gaps = 39/320 (12%)

Query: 177 VGVAPSASGVAGGVIGITGNGQTNSVTVAAGSSAKTIASQLNGAVGGLSASASTEAQFVV 236
           + +A +A G       I    +  S+  A GS++K+    +   +  L+   +  A+   
Sbjct: 72  ISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALNDELNRIAETTS 131

Query: 237 GAAAKTAPATFSMTVGGQTTTFTGVTDTASLADQLKSNAAKLGISVNFDEAK-------- 288
               K    TFS T   Q     G     +L D    N    G S    E K        
Sbjct: 132 FGGNKLLNGTFS-TKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAEGKDKDWKVQA 190

Query: 289 ----------------QSLSVKSDSGENLEFSAATAAGSITVATKDGSGSYGSAVAIANG 332
                           Q+++V +  G+++E   AT     T   K      G     A  
Sbjct: 191 GANDITFTLKDIDGNDQTITVNAKEGDDIE-EVATYINGQTDMVKASVNEKGQLQIFAGN 249

Query: 333 LKATGAVNLDSSKGYALNGAGVTGLFAATGTAAASAKTSVAQTDVTSAFNAQSAIAVIDK 392
            K TG V        A +G    GL  A    A +A+T V   DVTS   AQ ++AVID 
Sbjct: 250 NKVTGDV--------AFSG----GLAGALNMQAGTAET-VDTIDVTSVGGAQQSVAVIDS 296

Query: 393 AIGGIDSVRSGLGAVQNRLTTTVDNLTNIQKNSTAARSTVQDTDFAAETAELTKQQTLQS 452
           A+  +DS R+ LGA QNR    + NL NI +N  A++S ++DTDFA ET  LTK Q L  
Sbjct: 297 ALKYVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQ 356

Query: 453 AATAILSQANQLPSAVLKLL 472
           A++++L+QA Q P+A L LL
Sbjct: 357 ASSSVLAQAKQAPNAALSLL 376