Pairwise Alignments

Query, 473 a.a., branched-chain alpha-keto acid dehydrogenase subunit E2 from Pseudomonas simiae WCS417

Subject, 272 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  159 bits (401), Expect = 1e-43
 Identities = 91/185 (49%), Positives = 121/185 (65%), Gaps = 4/185 (2%)

Query: 1   MALTVNTNIASITTQNGLGKAANSLQTSMQRLSTGLSINSAKDNASGLQISNRLTSQING 60
           MA+TVNTN+ S+  Q  L  +A+ L TSM+RLS+GL INSAKD+A+GL ISNRL SQ+ G
Sbjct: 1   MAITVNTNVTSLKAQKNLNTSASDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LGQAVKNANDGISIAQTAEGAMQASTDILQKMRTLALSSATGSLSDADRTSNQEEYQALT 120
           L   ++NAND ISIAQ AEGAMQ  T++LQ+MR L + S  G+ S AD ++ + E   L 
Sbjct: 61  LEVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTVQSENGANSSADLSALKAEMDQLA 120

Query: 121 SELTRISQTTTFGGQKLLDGSYGT-KAIQVGANANETINLSLDNVAANNIGSQQIKSVGV 179
           +E+  I +TT FG  KLL G +   K  QVGA   E I ++   V A+N  S  + S+G 
Sbjct: 121 NEIDEIGKTTAFGTTKLLAGGFSAGKNFQVGAQDGEDIKVT---VKASNKSSLSVGSLGN 177

Query: 180 APSAS 184
             SA+
Sbjct: 178 TTSAA 182



 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 82/279 (29%), Positives = 125/279 (44%), Gaps = 18/279 (6%)

Query: 199 TNSVTVAAGSSAKTIASQLNGAVGGLSASASTEAQFVVGAAAKTAPATFSMTVGGQTTTF 258
           TN  ++ A  +  T AS L  ++  LS+     +     AA        +  V G     
Sbjct: 7   TNVTSLKAQKNLNTSASDLATSMERLSSGLRINSA-KDDAAGLAISNRLNSQVRGLEVGM 65

Query: 259 TGVTDTASLADQLKSNAAKLGISVNFDEAKQSLSVKSDSGEN--LEFSAATAAGSITVAT 316
               D  S+A Q+   A +     N  +  + L+V+S++G N   + SA  A        
Sbjct: 66  RNANDAISIA-QIAEGAMQE--QTNMLQRMRDLTVQSENGANSSADLSALKAEMDQLANE 122

Query: 317 KDGSG---SYGSAVAIANGLKATGAVNLDSSKGYALNGAGVTGLFAATGTAAASAKTSVA 373
            D  G   ++G+   +A G  A     + +  G  +           T  A+  +  SV 
Sbjct: 123 IDEIGKTTAFGTTKLLAGGFSAGKNFQVGAQDGEDIK---------VTVKASNKSSLSVG 173

Query: 374 QTDVTSAFNAQSAIAVIDKAIGGIDSVRSGLGAVQNRLTTTVDNLTNIQKNSTAARSTVQ 433
               T++    S++  ID AI  ID+ R+ LGA+QNRL   + N  N Q N   A+S + 
Sbjct: 174 SLGNTTSAARASSLKKIDAAIKTIDAQRADLGAIQNRLAHNISNSANTQANVADAKSRIV 233

Query: 434 DTDFAAETAELTKQQTLQSAATAILSQANQLPSAVLKLL 472
           D DFA ET+++TK Q LQ   +A+L+QANQLP   L LL
Sbjct: 234 DVDFAKETSQMTKNQVLQQTGSAMLAQANQLPQVALSLL 272