Pairwise Alignments

Query, 462 a.a., flagellar cap protein FliD from Pseudomonas simiae WCS417

Subject, 551 a.a., Flagellar hook-associated protein 2 (FliD, filament cap protein) (NCBI) from Rhodospirillum rubrum S1H

 Score =  121 bits (303), Expect = 7e-32
 Identities = 136/494 (27%), Positives = 217/494 (43%), Gaps = 67/494 (13%)

Query: 3   STTVNGVGSGIDIQGIVKSLVDADRAPKQTQIN---------TQSQKATTQLSSIGKIQS 53
           +T ++G  SG D   ++K+ V+A   P  T            T  Q+  T L++I     
Sbjct: 19  TTYISGT-SGFDSSALIKAAVNARMQPAYTLDAAIKDAGTKVTSWQEMLTDLTAISDSLK 77

Query: 54  ALDAFRGAIKSMTDDNSFSGLTGTSSNEKVATMTTGKGAANGSFNLVVNQLAQPSKLSTT 113
            L + +GA+ S       S    T S+   AT+T G  AA G +++ + +LA   K++  
Sbjct: 78  PLSSAKGAVYSTFTAYLNSSTLTTPSSYVAATVTDG--AAAGIYDVKIERLATTHKVAAN 135

Query: 114 TLTGGASTVVNKGDTATTLSISQSGKKFDVSVPPGATLQQVRDSINSQFGTSGLSANIV- 172
            +    +T V  G        ++      +++    +L  +  +IN+Q  TSG+SA +V 
Sbjct: 136 AVA--TATTVGPGSFTLKAGTAEGAT---ITLDKATSLSDLAKAINAQSATSGVSATLVK 190

Query: 173 TDASGSRMVLTSTTGGVGSDLT----LSGNSGIDTGYKVID-EPKNAEYTIDGVAYTAKT 227
           T  + S +VL++TT GV    T    L    G+D+G   +D E   A+ TIDGV  T+ T
Sbjct: 191 TSDNQSTLVLSATTTGVAITATDTDGLLAGLGLDSGDFTVDGESLKAKLTIDGVTVTSST 250

Query: 228 NNITDAVSGVSIKLLSVSPPVSSTDPTKAVTTISVSTSTAALKSGVKGFVDSYNALLKAM 287
           N+I D V GVS+ L + +   S         T+ +    +ALK  V+ FV ++NA     
Sbjct: 251 NDIKDLVPGVSLNLYAATGTGS--------ITLEIGQDLSALKKQVETFVKAFNAY--RT 300

Query: 288 NAETKVTKDAAGNSVSATLTGDANMRSLQSALRSEFNALSGNGQFKSLAQFGIGTDSNTG 347
            A T+   D  G + +A L GD  +RS  SA+    NA +  G   +LA FGI T     
Sbjct: 301 FALTQQATDENGAADTAILFGDGLLRSANSAIFDAINANTKVGGV-TLANFGI-TMGTGN 358

Query: 348 LLTMDDKAFDKAALTNAADINSML----------------GGK------------DGLLA 379
           +L +DD A  KA L +   I +                  GGK            DG  A
Sbjct: 359 MLEIDDAALQKALLQDPKAIQAFFQTSSTSTSPDLGVYQAGGKVATGDYTVNVTVDGSGA 418

Query: 380 RMTAATDGYAKPTTGVFATRSSALSDSLKKLTKDQSDLDAHVQDLTDSLTRKYAAMDSLV 439
              A  +G A    G   T +     + + +T   +  +A     T S++R  A  D+++
Sbjct: 419 VTGATINGVALAVNG--TTLTGTTGSAYEGVTLVYTGKEAGTHTATLSISRGLA--DTML 474

Query: 440 AQLRQQSNNIMGTL 453
           + L   +N+  G +
Sbjct: 475 SSLETYTNSSTGLI 488