Pairwise Alignments

Query, 491 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  275 bits (704), Expect = 2e-78
 Identities = 168/437 (38%), Positives = 243/437 (55%), Gaps = 51/437 (11%)

Query: 55  VLIGTVNAPG-AVLGLLKTLSTWDEFLPVLLI---GDIS-SVELPEDQRRRVLSTLEMPP 109
           V++  +  PG +   LL ++   D  LPV+LI   GDIS +V+   D        +E P 
Sbjct: 49  VIVSDICLPGLSGQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDG---AYDFIEKPF 105

Query: 110 SYSKLLDSLHRAQVYREMYDQARERGRHREPN--LFRSLVGTSRAIQHVRQMMQQVADTD 167
           +  +L+D++HRA   R +  + R+  R  + +  L   ++G + AIQ +R  + QVADT 
Sbjct: 106 APERLIDTVHRAIEKRRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQ 165

Query: 168 ASVLILGESGTGKEVVARNLHYHSKRRDGPFVPVNCGAIPAELLESELFGHEKGAFTGAI 227
           A +L+ GE+GTGKE+VAR+LH  S RR+  FV +NCGA+P  L+ESEL+GHEKGAFTGA 
Sbjct: 166 ADILLFGETGTGKELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGAD 225

Query: 228 TSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATH 287
           + R G+FE A GGTLFLDEI  MP+  Q++LLRVLQER  ER+GSN+   +D+R+IAAT 
Sbjct: 226 SRRVGKFEHAQGGTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATK 285

Query: 288 KNLESMIEVGSFREDLYYRLNVFPIEMAPLRERVEDIPLLMNE-LISRMEHEKRGSIRFN 346
            +L+     G FR+DLYYRLN+  + + PLRER EDIP L +  L+       + +    
Sbjct: 286 IDLKQAAAEGKFRQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALT 345

Query: 347 SAAIMSLCRHGWPGNVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQLVDSLRT 406
           ++ + SL  H WPGNVREL N  ER  ++                               
Sbjct: 346 ASDVQSLLSHDWPGNVRELRNAAERYVLL------------------------------- 374

Query: 407 DMEERVAINGHTPDFGSTAMLPPEGLDLKDYLGNLEQGLIQQALDDANGIVARAAERLRI 466
                    G    F  +     + L L + +   E+ L++Q L +  G +    ERL +
Sbjct: 375 ---------GKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERLHL 425

Query: 467 RRTTLVEKMRKYGMSRK 483
            R TL +KM+KY + ++
Sbjct: 426 PRKTLYDKMQKYQLDKE 442