Pairwise Alignments

Query, 491 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  271 bits (692), Expect = 5e-77
 Identities = 189/483 (39%), Positives = 255/483 (52%), Gaps = 21/483 (4%)

Query: 7   ILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVSSLSSSREVICVLIGTVNAPGAV 66
           IL++DDD+  R  L  +L   G       + D + AV+ +   R    VL+    A    
Sbjct: 6   ILIVDDDAAHRSMLRTMLRGWGYATEE--ADDGESAVAKVRQ-RAWDAVLMDVRMARMDG 62

Query: 67  LGLLKTLSTWDEFLPVLLIGDISSVELP-EDQRRRVLSTLEMPPSYSKLLDSLHRAQVY- 124
           +  L+ +  W+   PVL++   SSV+   E  R      L  P  +  L  +L RA  + 
Sbjct: 63  IAALRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALDHT 122

Query: 125 ------REMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGT 178
                 RE+ ++   +G    P     ++G S  +  + +M+  VA ++A+VLI GESGT
Sbjct: 123 RLASENRELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGESGT 182

Query: 179 GKEVVARNLHYHSKRRDGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELAN 238
           GKE+VAR LH  S R   P V VNC A+   LLESELFGHE+GAFTGA   R GRF  A+
Sbjct: 183 GKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQAD 242

Query: 239 GGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGS 298
           GGTLFLDEIG+MPL +Q KLLR LQ+   +RVGS+   +VDVR+IAAT+++L      G 
Sbjct: 243 GGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAAGR 302

Query: 299 FREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIR-FNSAAIMSLCRHG 357
           FREDLYYRLNV  + +  LRER  D+PLL    + R   + R  ++ F   A+  L RH 
Sbjct: 303 FREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLRHD 362

Query: 358 WPGNVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQLVDSLRTDMEERVAINGH 417
           WPGNVREL N +ER  I+     +   ELP  F            S  T      A  G+
Sbjct: 363 WPGNVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSAGTG----EAGAGN 418

Query: 418 TPDFGSTAMLPPEGLDLKDYLGNLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRK 477
            P  G   + P  GL L+D    LE+  I   L +     + AA RL I R TL  K++K
Sbjct: 419 APADGD-GLAPYAGLSLED----LERRAIIATLRETADNKSEAARRLGITRATLHNKLKK 473

Query: 478 YGM 480
           Y +
Sbjct: 474 YDL 476