Pairwise Alignments

Query, 491 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 551 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  273 bits (697), Expect = 1e-77
 Identities = 163/372 (43%), Positives = 224/372 (60%), Gaps = 26/372 (6%)

Query: 118 LHRAQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESG 177
           LH  +      ++ R +  H   +    +VG   A   V   +  VA TDA+VL+ GESG
Sbjct: 197 LHLRRELERENERLRRQVEHGSADGNLPIVGDCPAWLRVLAQVDMVAPTDATVLVQGESG 256

Query: 178 TGKEVVARNLHYHSKRRDGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELA 237
           TGKE+VA  +H  S+R   P V VNC AIP EL ESE FGH KGAFTGA+  R GRF++A
Sbjct: 257 TGKELVAEAIHRRSQRSTAPLVRVNCSAIPRELFESEFFGHVKGAFTGAVRDRIGRFQMA 316

Query: 238 NGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVG 297
           +GGTLFLDE+G++PL +Q KLLRVLQE TFERVG ++T+SVDVRIIAAT+++L   ++ G
Sbjct: 317 DGGTLFLDEVGEIPLELQGKLLRVLQEGTFERVGEDRTRSVDVRIIAATNRDLRQEVDAG 376

Query: 298 SFREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHE-KRGSIRFNSAAIMSLCRH 356
            FR+DL++RL+VFP+E+ PLR+R  DIPLL    I++        + R   AA+  L  +
Sbjct: 377 RFRQDLFFRLSVFPVELPPLRDRQGDIPLLARHFIAQSSRRLGLPTPRLTPAALARLSAY 436

Query: 357 GWPGNVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQLVDSLRTDMEERVAING 416
            WPGNVRE+ N++ER  IM   G +G+  LP              + LR D  +RV++  
Sbjct: 437 PWPGNVREMQNVIERAVIMAEEGALGMDALPAP------------EGLRHD--DRVSVAA 482

Query: 417 HTPDFGSTAMLPPEGLDLKDYLGNLEQGLIQQALDDANGI---VARAAERLRIRRTTLVE 473
             P  G+T ++  E          +++  I++AL  A G    V  AAE L I  TTL  
Sbjct: 483 PAP--GATTIVTEE------EWRTMQRDNIRRALQAAEGRVHGVGGAAELLGIPPTTLRS 534

Query: 474 KMRKYGMSRKEG 485
           +M+  G+S K+G
Sbjct: 535 RMQALGLSPKQG 546