Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  460 bits (1183), Expect = e-134
 Identities = 254/473 (53%), Positives = 319/473 (67%), Gaps = 27/473 (5%)

Query: 4   KVLLVEDDRALREALADTLLLAGHDYRAVGSAEAALEAVEQESFSLVVSDVNMPGMDGHQ 63
           KVL+VEDD  LREAL DTL LAG+++     AE AL  ++  S  +VVSDV M GM G  
Sbjct: 7   KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLA 66

Query: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIELVVRHALGVIP 123
           LL  ++   P LPVLLMTA+  ++ AV AM+ GA DY+ KPF P+ L+ +V R+A   + 
Sbjct: 67  LLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA--PVK 124

Query: 124 PSDGEGPIAFEPASAQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSTRAKQPFI 183
             D    +  +  S +LL LA +VA++D+ V+I G SG+GKEV++RYIH  S R + PFI
Sbjct: 125 SDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFI 184

Query: 184 AINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDEISEMPLGLQAKLL 243
           AINCAAIPDNMLEATLFG+EKG+FTGA+ A  GKFEQA GGTILLDEISEM L LQAKLL
Sbjct: 185 AINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLL 244

Query: 244 RVLQEREVERVGARKPIQLDIRVVATTNRDLAGEVAAGRFREDLFYRLSVFPLAWRPLRE 303
           RVLQEREVER+G+RK I+LD+RV+AT+NRDL   V AG FREDL+YRL+VFPL W  L E
Sbjct: 245 RVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCE 304

Query: 304 RPADIIPLAERLLNNHVKKMKHAQAGLSAEAQACLIAYPWPGNVRELDNAIQRALILQQG 363
           R  DI PLA  L+  H KK+      ++  A   L+ YPWPGNVRELDN +QRALIL + 
Sbjct: 305 RKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSEN 364

Query: 364 GLIQPQDFCL-------------AMGSGAAPLPTLAPT-------PVVV-----EAETAG 398
           G IQ +   L             A+   +   P + P        P+V       +  + 
Sbjct: 365 GHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSS 424

Query: 399 ALGDDLRRREFQMIIDTLRSERGRRKEAAERLGISPRTLRYKLAQMRDAGMDV 451
            LG +LR +EF +I+DTL   +GRRKE AE+LGISPRTLRYKLA+MRDAG+D+
Sbjct: 425 GLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDI 477