Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  286 bits (732), Expect = 9e-82
 Identities = 182/465 (39%), Positives = 262/465 (56%), Gaps = 39/465 (8%)

Query: 5   VLLVEDDRALREALADTLLLAGHDYRAVGSAEAALEAVEQESFSLV-VSDVNMPGMDGHQ 63
           V L++D+  +R ALA +  LA  + +   S E AL A++ +   LV VSD+ +PG+ G  
Sbjct: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63

Query: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIELVVR------- 116
           LL  +  +  +LPV+L+T HG +  AV AM  GA D++ KPF P+ LI+ V R       
Sbjct: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123

Query: 117 -----HALGVIPPSDGEGP-IAFEPASAQLL-ELAARVARSDSTVLISGESGTGKEVLAR 169
                     +  S   GP I  E A+ Q L +  A+VA + + +L+ GE+GTGKE++AR
Sbjct: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183

Query: 170 YIHQQSTRAKQPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLD 229
            +H+QS+R +Q F+AINC A+P+N++E+ L+GHEKG+FTGA + + GKFE A GGT+ LD
Sbjct: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243

Query: 230 EISEMPLGLQAKLLRVLQEREVERVGARKPIQLDIRVVATTNRDLAGEVAAGRFREDLFY 289
           EI  MP+  Q +LLRVLQER +ER+G+ + I LDIRV+A T  DL    A G+FR+DL+Y
Sbjct: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303

Query: 290 RLSVFPLAWRPLRERPADIIPLAERLLNNHVKKMKHAQAGLSAEAQACLIAYPWPGNVRE 349
           RL++  L   PLRER  DI  L    L     +   A   L+A     L+++ WPGNVRE
Sbjct: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363

Query: 350 LDNAIQRALILQQGGLIQPQDFCLAMGSGAAPLPTLAPTPVVVEAETAGALGDDLRRREF 409
           L NA +R ++L  G L Q             P   L              L + +   E 
Sbjct: 364 LRNAAERYVLL--GKLAQ-------FAESHEPKSKLL------------GLNEQVAEFEK 402

Query: 410 QMIIDTLRSERGRRKEAAERLGISPRTLRYKLAQMRDAGMDVEAY 454
            ++  TL    G  K   ERL +  +TL  K+ + +   +D E+Y
Sbjct: 403 SLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQ---LDKESY 444