Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 462 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  302 bits (774), Expect = 1e-86
 Identities = 189/452 (41%), Positives = 264/452 (58%), Gaps = 25/452 (5%)

Query: 5   VLLVEDDRALREALADTLLLAGHDYRAVGSAEAALEAVEQESFSLVVSDVNMPGMDGHQL 64
           +LL+EDD A +  L + L   G+   AV  AE  +  V    F LV++DV +PG+ G + 
Sbjct: 5   ILLIEDDTAFQGMLREALEERGYRVTAVNRAEDGVRIVRSGDFDLVLTDVMLPGISGVEA 64

Query: 65  LGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIELVVRHAL----- 119
           +  LR   P   +++MTA    E A++A++ GA D+  KPF  K L ++V+R A+     
Sbjct: 65  IPRLREAAPGTDIVVMTAFSTRELALEAVKLGAYDFFSKPFSLKEL-DIVIRRAMEKRRM 123

Query: 120 -GVIPP--------SDGEGPIAFEPASAQLLELAARVARSDSTVLISGESGTGKEVLARY 170
            G I          +     +    A   +  L  R+A  +STVLI GESGTGKE++A  
Sbjct: 124 QGEIVALRETLRRDTPTSRIVGESRAMRDVKALLERIAPLESTVLIMGESGTGKELIADT 183

Query: 171 IHQQSTRAKQPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDE 230
           I   S RA  PF+ +NCAAIP+++ E  LFGHEKG+FTGA  A  GKFEQA GG I+LDE
Sbjct: 184 IRALSPRAANPFVKVNCAAIPEHLFENELFGHEKGAFTGAATAMPGKFEQAQGGMIMLDE 243

Query: 231 ISEMPLGLQAKLLRVLQEREVERVGARKPIQLDIRVVATTNRDLAGEVAAGRFREDLFYR 290
           I +MPL +Q KLLRV+++++VER+G R P+ LD+R++A TN++LA  V    FREDL+YR
Sbjct: 244 IGDMPLAIQPKLLRVVEQKQVERLGGRAPVPLDVRIIAATNQNLAERVREKAFREDLYYR 303

Query: 291 LSVFPLAWRPLRERPADIIPLAERLLNNHVKKMKHAQAGLSAEAQACLIAYPWPGNVREL 350
           LSV  +   PLR+R  DI  LA+  +N     +     GLS +A A L+ + WPGNVR+L
Sbjct: 304 LSVAVVLIPPLRDRKDDIPLLAQYFVNKLEGTLGLPVHGLSPDAIAVLMDHDWPGNVRQL 363

Query: 351 DNAIQRALILQQGGLIQPQDFCLAMGSGAAPLPTLAPTPVVVEAETAGA-LGDDLRRREF 409
            N ++RA I    GLI  +D   A+G+        A    V +A  +G  L   LR  E 
Sbjct: 364 ANVLERAAIAAD-GLICARDVMAAIGT--------ARGSNVDKATLSGMDLKTTLRMVER 414

Query: 410 QMIIDTLRSERGRRKEAAERLGISPRTLRYKL 441
            +I+D LR   GR+ EAA  LG++P+ L  KL
Sbjct: 415 NLILDALRRCHGRQTEAAVLLGLTPKNLWAKL 446