Pairwise Alignments

Query, 592 a.a., flagellar M-ring protein FliF from Pseudomonas simiae WCS417

Subject, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

 Score =  270 bits (691), Expect = 9e-77
 Identities = 181/571 (31%), Positives = 298/571 (52%), Gaps = 50/571 (8%)

Query: 28  LSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIA 87
           + ++ +LRQV L++ ++  VA+   +  W ++PD RPL G+    +   +++ L      
Sbjct: 47  VGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELIPVLDYLDQQKQQ 105

Query: 88  YTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFMEATRYRR 147
           Y ++ N+  +LV   D    ++ +  AG+   +   G EIL +D G G SQ +E  R + 
Sbjct: 106 YKLDGNT--ILVPVSDYNSLKLSMVRAGLN-QNRQAGDEILMQDMGFGVSQRLEQERLKL 162

Query: 148 GLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAI 207
             E +LA+ I  +  V  ARV LA+PK SVFVR  ++ SASV + +  G +L+  ++ A+
Sbjct: 163 SRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQEEIDAV 222

Query: 208 VNLVATSVPELSKSQITVVDQKGNLLSDQAENSALTQAGKQFDYSRRVESMLTQRVHNIL 267
           V++VA++VP +  S++TV DQ G LLS  +++       K+ +  ++ E  L  ++ ++L
Sbjct: 223 VDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVL 282

Query: 268 QPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSEQRTAANGPPQGVPGAL 327
            P+LG   Y A+V  ++DFSAVE T + F+P+ PA RSE +  +          GVPGAL
Sbjct: 283 IPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNN--GNVVAGVPGAL 340

Query: 328 SNQPPAPASAPQTTGGATASAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPADKRNQST 387
           SNQPPA AS PQ    A    G++  GQ                             ++T
Sbjct: 341 SNQPPADASIPQDV--AQMKDGSVM-GQ------------------------GSVHKEAT 373

Query: 388 KNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNAADGAVTRAPWSADELARFTRLVQD 447
           +N+ELD +ISH ++Q G +NR +V+V V  +  VN   G VT  P S  +L    +++  
Sbjct: 374 RNYELDTTISHERKQSGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIG 433

Query: 448 AVGFDASRGDSVSVINMPFSAERGEVIAEPAFYSQPWFWDIVKQVLGVLFILVLVFGVLR 507
            VG+  +RGD ++V++MPF+    E I +   +  P F D V+     L I++++  ++R
Sbjct: 434 TVGYSENRGDLLNVLSMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLVR 493

Query: 508 PVLNNITGNGKKQLALAGGDVELGGMGGL----DGELANDRVSLGGPQ------SILLPS 557
           P +  +          A  D ++ G  G+    DGE +     + G +       I LP+
Sbjct: 494 PAMKKLIN------PAADNDDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLPN 547

Query: 558 PSEGYDAQLNAIKSLVAEDPGRVAQVVKEWI 588
             +  D  L A+++LVA +P   AQVVK W+
Sbjct: 548 LHKDEDV-LKAVRALVANEPELAAQVVKNWM 577