Pairwise Alignments

Query, 322 a.a., flagellar motor switch protein FliM from Pseudomonas simiae WCS417

Subject, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

 Score =  390 bits (1003), Expect = e-113
 Identities = 189/319 (59%), Positives = 251/319 (78%), Gaps = 2/319 (0%)

Query: 5   DLLSQDEIDALLHGVDDGLVQTEMAAEPG-SVKSYDLTSQDRIVRGRMPTLEMINERFAR 63
           DLLSQDEIDALLHGVD    + E   + G S  ++D +SQDRIVRGRMPTLE+INERFAR
Sbjct: 3   DLLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERFAR 62

Query: 64  YTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLV 123
           + RIS+FNMLR++A+V++ GVQ+MKFGEY ++LYVPTSLN+V+ +PL+GTAL  ++A+LV
Sbjct: 63  HLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLV 122

Query: 124 FKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIMEVNFEYINSE 182
           F LV+NFFGGDGR HA+IEGREFTPTE RV++++L+  F D KEAW  +M V FEY++SE
Sbjct: 123 FILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLDSE 182

Query: 183 VNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDE 242
           VNP+MANIV P+E IVVS+FH+E+DGGGGD H+ MPYSM+EP+RE+LDAG QSD  + D 
Sbjct: 183 VNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDV 242

Query: 243 RWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDIIPVELPEEMIMRANGVPSFKV 302
           RW  ALRE+++DV V     +    + LRD++ +Q GD+IP+++PE  +M    +P+++V
Sbjct: 243 RWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTYRV 302

Query: 303 KLGSHKGNLALQVVEPINR 321
           K+G     LA+QV E I R
Sbjct: 303 KMGRSGEKLAVQVSEKIKR 321