Pairwise Alignments

Query, 709 a.a., flagellar biosynthesis protein FlhA from Pseudomonas simiae WCS417

Subject, 699 a.a., flagellar biosynthesis protein FlhA (RefSeq) from Shewanella amazonensis SB2B

 Score =  842 bits (2176), Expect = 0.0
 Identities = 437/687 (63%), Positives = 540/687 (78%), Gaps = 11/687 (1%)

Query: 22  LGVPLLLLVMLAMMMLPMPPFLLDVFFTFNIALSVVVLLVCVYALRPLDFAVFPTILLVA 81
           LG P L+L  LAM++LPMP FLLD+ F+FNIAL++VVLLV +Y  RPLDFA FPT+LLVA
Sbjct: 21  LGTPALVLAALAMIVLPMPAFLLDILFSFNIALALVVLLVAIYTNRPLDFAAFPTVLLVA 80

Query: 82  TLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVV 141
           TLLRLALNVASTRVV+L G +G  AAGKVI+AFG VVIGGNY VG+VVF IL+IINF VV
Sbjct: 81  TLLRLALNVASTRVVLLEGHNGADAAGKVIEAFGSVVIGGNYAVGLVVFLILIIINFAVV 140

Query: 142 TKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQNQAKSRRLEVAQEAEFYGSMDGA 201
           TKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLI+Q QA++RR EV +EA+FYG+MDGA
Sbjct: 141 TKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLINQEQARTRRAEVTKEADFYGAMDGA 200

Query: 202 SKFVRGDAIAGLLILFINLIGGMAVGIFQHGMTFGDAGKVYALLTIGDGLVAQLPSLLLS 261
           SKFV+GDAIAG++IL IN++GG  +G+ QH + F DA ++Y LLTIGDGLVAQ+P LLLS
Sbjct: 201 SKFVKGDAIAGIMILVINILGGFVIGMVQHDLAFMDAVEIYTLLTIGDGLVAQIPGLLLS 260

Query: 262 TAAAIMVTRASGSEDMGKQISRQMFASPKALAVAAGIMAIMGIVPGMPHVSFLSMAAMAA 321
            AAA+MVTR +   DMG  +  QMF +PK+LA+AAG++ IMGIVPGMPH++FL+ A    
Sbjct: 261 IAAALMVTRQNEEGDMGGMVMSQMFDNPKSLAIAAGVLFIMGIVPGMPHLAFLTFAVATG 320

Query: 322 GGAYLFWKKQNAVKVQAQQEIA--RQQELLPSPARAQETKELGWDDVTPIDMIGLEVGYR 379
            GAY   K+    K QA +  A    ++L  SP      KELGWDDV  +D IGLEVGYR
Sbjct: 321 AGAYFLHKRIEKRKQQALEAAASGSVEKLDNSP------KELGWDDVRHVDTIGLEVGYR 374

Query: 380 LIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEA 439
           LIPLVD+ QGG+LL+RIKGVRKKLSQ+LGFL+P VHIRDNLDLAPS YR++LMGV++ EA
Sbjct: 375 LIPLVDKGQGGELLSRIKGVRKKLSQELGFLVPAVHIRDNLDLAPSTYRISLMGVVVGEA 434

Query: 440 EIYPDRELAINPGQVFGSLNGITAKDPAFGLDAVWIEISQRSQAQSLGYTVVDASTVVAT 499
           EI  D ELAINPGQVFG L+G+T +DPAFGL+AVWI    R  AQ+LGYTVVDA+TVVAT
Sbjct: 435 EIRHDCELAINPGQVFGQLDGVTTRDPAFGLEAVWIAPELREHAQTLGYTVVDAATVVAT 494

Query: 500 HLNQILYKHSHELIGHEEVQQLMGLLAKASPKLAEELVPGVLSLSQLLKVLQALLAEQVP 559
           H++Q L  ++ +L+G+EEVQQL+ +LAK SPKL +  +P V+SL  ++KV+Q LL E V 
Sbjct: 495 HISQTLSNNASKLLGYEEVQQLLDILAKHSPKLVDGFIPDVMSLGTVVKVMQNLLNEGVS 554

Query: 560 VRDIRSIAEAIANNAAKSQDTAALVAAVRVGLSRAIVQSIVGLDSELPVITLEPRLEQIL 619
           VRD+R+I + +     KS DT  L AAVR+ L R IVQ I G ++E+PVITL P LEQ+L
Sbjct: 555 VRDLRTIVQTLLEYGTKSGDTEVLTAAVRIALKRMIVQEIAGPEAEIPVITLAPELEQML 614

Query: 620 LNSIQKAGQGQEEGVLLEPSMAEKLQRSLIDAAQRQEMQGQPVILLVAGPVRAMLSRFGR 679
             S+Q +G    +G  +EP +AE++Q+SL DAAQRQEM GQP ILL +G +R+ LSRF +
Sbjct: 615 HQSMQASG---GDGPNIEPGLAERMQQSLADAAQRQEMVGQPAILLTSGMLRSTLSRFVK 671

Query: 680 LAVPNLHVLAYQEIPDNKQVTIVATVG 706
             +PNL V++YQEIPD KQ+ IV+ VG
Sbjct: 672 YTIPNLRVISYQEIPDEKQIRIVSAVG 698