Pairwise Alignments

Query, 246 a.a., flagellar biosynthesis sigma factor from Pseudomonas simiae WCS417

Subject, 239 a.a., flagellar biosynthesis sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  255 bits (652), Expect = 5e-73
 Identities = 131/232 (56%), Positives = 169/232 (72%), Gaps = 9/232 (3%)

Query: 15  DSQGELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDASKGASFETY 74
           D++  ++E+YAPLVKRIA+HLLARLPASVQ++DL+QAGM+GLLE S K+D SKGA FET+
Sbjct: 11  DNKASIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASAKFDGSKGAKFETF 70

Query: 75  AGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAELQLSLDD 134
           AGIRIRG+MLDE+R+GDW PRSVHRN R ++  I  +E + GRDAKD+E+A  L ++LD+
Sbjct: 71  AGIRIRGSMLDEIRRGDWVPRSVHRNQRRIAQVIDELEQELGRDAKDNEIADRLDMTLDE 130

Query: 135 YYGILNDTLGSRLFSFDDL---LQDGEHEGLHEDGASAHMEPSRDLEDERFQGALADAIA 191
           Y+ ILND    ++   +DL   +     E  H+D A         L + +F  AL +AI 
Sbjct: 131 YHHILNDVSVGKVVGIEDLGVSVDVVRQEDDHQDDA------FESLAETQFHEALVEAIK 184

Query: 192 NLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEW 243
            LPER+ LVL+LYYDE LNLKEIG VL VSESRVSQ+HSQ   RL+ +L  W
Sbjct: 185 LLPERDGLVLSLYYDEALNLKEIGAVLDVSESRVSQIHSQAMLRLKAKLKHW 236