Pairwise Alignments

Query, 735 a.a., chemotaxis protein CheA from Pseudomonas simiae WCS417

Subject, 746 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  814 bits (2102), Expect = 0.0
 Identities = 450/758 (59%), Positives = 543/758 (71%), Gaps = 37/758 (4%)

Query: 1   MSFGADEEILQDFLVEAGEILEQLSEQLVELESRPDDANLLNAIFRGFHTVKGGAGFLQL 60
           MSF  DEEILQDFL+EAGEILE LSEQLV LE+ PDD  LLNAIFRGFHTVKGGAGFL L
Sbjct: 1   MSFDVDEEILQDFLIEAGEILELLSEQLVALENNPDDTELLNAIFRGFHTVKGGAGFLSL 60

Query: 61  HELVECCHIAENVFDILRKGERHVDSELMDVILEALDAVNGMFSEVRERAPITAATPELL 120
             +V+ CH AEN FD+LR G+R V +ELMD+IL+A+D +N MF+E +     + A   LL
Sbjct: 61  TPMVDVCHEAENTFDLLRTGKRSVSAELMDIILQAVDTINSMFAETQAGVEQSPADEGLL 120

Query: 121 AALARYA-------EPADLSAAPVAEAAPEPVAEAEPDVTDSEFEQLLNSLSAVKAE--A 171
           A L   +       E    S   VAE   EP  E   D     F+  L+    +  E  +
Sbjct: 121 ANLKLLSSGGLLPSEQGGASVEAVAETPAEPAVEIPADDGIELFDMPLDDGVELFDEPVS 180

Query: 172 EAPAAAVAAPTS-EDITDAEFESLLDQLHGKGQFAADAVTPAAVSEAPAAPT-ANANTDI 229
           +AP  ++A     ++I ++EFE+LLD LHG G+       P++ + A  AP  A+ + DI
Sbjct: 181 DAPVTSIAGEGDIDEIDESEFEALLDALHGSGK------GPSSTAPAGVAPIQASDSDDI 234

Query: 230 TDDEFEALLDQLHGKGTFVADALPEVAATAAAPAAASAAPAGDGLISDHEFESLLDELHG 289
           TDDEFE+LLD+LHG G F A + P     A  P   S  P     I+D EFE LLDELHG
Sbjct: 235 TDDEFESLLDELHGSGKFQAPSAP----IAKVPEPTSP-PVDADEITDDEFEKLLDELHG 289

Query: 290 KG-----KFSEVAPAATVATAAPVAAKAAAPAPA-----PAAKPAPAAAPAPARAAAAPV 339
            G     + S+   +A  A AAP   K A PAP+     P   PAP        AA AP 
Sbjct: 290 AGAGPGSETSKPVASAAKAPAAPAPNKVATPAPSSVKSQPVEVPAPKPVVKEKAAAKAPA 349

Query: 340 ADKPASEAETTVRVDTARLDDIMNMVGELVLVRNRLVRLGLSSGDEAMQKAVSNLDVVTA 399
            + P  +AETTVRVDTARLD IMNMVGELVLVRNRL+ LG+S  DE M KA++NLD+VTA
Sbjct: 350 TNMP--QAETTVRVDTARLDQIMNMVGELVLVRNRLLSLGISRDDEDMSKALANLDLVTA 407

Query: 400 DLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALADPLV 459
           DLQ AVMKTRMQPIKKVFGRFPR+VRDLAR L KEI+L ++GE+TDLDKNLVEALADPLV
Sbjct: 408 DLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLRMIGEDTDLDKNLVEALADPLV 467

Query: 460 HLVRNAVDHGVETPEEREASGKSRNGKVILAAEQEGDHILLSITDDGKGMDPAILRNIAV 519
           HLVRN+VDHG+E P+EREA+GKSR G + L+A QEGDHILL I DDG GMDP  L+ IA+
Sbjct: 468 HLVRNSVDHGIEMPDEREANGKSRTGTITLSASQEGDHILLKIEDDGAGMDPEKLKQIAI 527

Query: 520 KRGVMDKDAADRLTDSECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGSINIY 579
           KRGV+D+DAA R++D E YNLIFAPGFSTK EISD+SGRGVGMDVVKT+I+QLNG+++I 
Sbjct: 528 KRGVLDEDAAARMSDEEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQLNGTVHID 587

Query: 580 STKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQEVVI 639
           S KG+G+ + IKVPLTLAIMPTLMV +  Q FA PL +V+EIFHLDL++TNVVDGQ  VI
Sbjct: 588 SLKGKGTCLEIKVPLTLAIMPTLMVEVAQQVFALPLSSVSEIFHLDLTKTNVVDGQLTVI 647

Query: 640 VRDKALPLFYLKRWL---VASAKHEEQREGHVVILSVGTQRIGFVVDQLVGQEEVVIKPL 696
           VR+KA+PLFYL+ WL     S KH +++ GHVVI+ +GT +IGFVVD L+GQEEVVIKPL
Sbjct: 648 VREKAVPLFYLEHWLSRKAVSFKHGDKQHGHVVIVQLGTMQIGFVVDSLIGQEEVVIKPL 707

Query: 697 GKMLQGTPGMSGATITGDGRIALILDVPSMLKRYAARR 734
           G +L GTPGM+GATIT DG IALILDVP +LK YA  +
Sbjct: 708 GTLLHGTPGMAGATITSDGGIALILDVPGLLKHYAKNK 745