Pairwise Alignments

Query, 246 a.a., flagellar motor protein from Pseudomonas simiae WCS417

Subject, 266 a.a., MotA/TolQ/ExbB proton channel (NCBI) from Rhodospirillum rubrum S1H

 Score =  124 bits (310), Expect = 2e-33
 Identities = 81/253 (32%), Positives = 133/253 (52%), Gaps = 8/253 (3%)

Query: 1   MDVLSLIGIIMAFVAIIGGNYLEGGHLGALANGPAALIVIGGTVGAALLQSPLSSFKRAM 60
           M + +++G++  F        L   +      G + ++V+GGT+ AA +         A+
Sbjct: 1   MSLATILGVLFGFGLFCLSVILSTDNYLLFLKGESFIMVVGGTLAAAFVSFEPRYVVSAL 60

Query: 61  QILVWIIFPPRVD---LPGGIDRVVNWSLTARKEGLLGLEGVADA--EPDSYARKGLQLL 115
           + +V I+F   V    L   + RV+ W    +K GL GLE  A    + D +   GL L+
Sbjct: 61  RSMVAILFNHEVSRSILTHEVGRVIRWGYIIQKNGLPGLEADAQKVRKQDRFLSYGLDLV 120

Query: 116 VDGAEPEAIRSILEVDFYTQESRDINAAKVFESMGGYAPTIGIIGAVMGLIHVMGNL-AD 174
           V G     +R IL         R +  A++  +MGG AP  G+IG ++GLI +  ++ ++
Sbjct: 121 VTGYTGTEVREILANTVENTFQRQVVPAEILRNMGGTAPAFGMIGTLVGLIIMFDSMGSN 180

Query: 175 PSQLGSGIAVAFVATIYGVASANLVLLPVASKLKSIAMRQSRYREMLL-EGILSIAEGEN 233
           P  +G+G+AVA  AT+YG+ SA L+ LP ASK+K       RYR  LL EG+  +AE ++
Sbjct: 181 PGSMGAGLAVALTATLYGLLSARLLFLPAASKVKQ-REELIRYRNYLLAEGLALLAERKS 239

Query: 234 PRSIELKLQGFMD 246
           PR I+ ++  ++D
Sbjct: 240 PRYIQDRMNSYLD 252