Pairwise Alignments

Query, 262 a.a., chemotaxis protein CheW from Pseudomonas simiae WCS417

Subject, 329 a.a., CheW protein (RefSeq) from Shewanella loihica PV-4

 Score =  126 bits (317), Expect = 5e-34
 Identities = 83/262 (31%), Positives = 128/262 (48%), Gaps = 16/262 (6%)

Query: 3   RPVELKTRP----QLALESYLDALLQDATAQEFPEPILVLEPAVEPEAVLDEFQLAVLEE 58
           RPV  +  P    +LALE  L  + + AT  E      V    ++ +    E     +  
Sbjct: 63  RPVVTQATPTPLNKLALEQLLAPVSEIATQTETQTASKVELKTLDTKPASVETMTQAVSV 122

Query: 59  QARDARSV---VPMTPQVAPVVVAPAVVEPVVEVHLPPSI----TPPPVAGDDRPSWAAE 111
           Q +    V   +    + +  +    +V   V++   P      TPP V  +       +
Sbjct: 123 QTKSESQVKQKIEEKLETSASIKQEEIVTEKVDLAAAPQTQTGATPPGVT-EALVEQLDD 181

Query: 112 PFECLLFDVAGLTLAVPLVCLGSIYSLEGQELTPLFGQPEWFLGILPSQAGNLKVLDTAR 171
            F+ L F VAGLTLAVPLV LG I  +E   +  + G+P W+LG+   +   L ++D+  
Sbjct: 182 EFQVLFFKVAGLTLAVPLVSLGGIVKVE--RINHIMGRPAWYLGVQTHRDSQLNIVDSGA 239

Query: 172 WVMPDRYRDDFRQGL--QYVISVQGYEWGLAVHQVSRSLRLDPNEIKWRSHRGQRPWLAG 229
           WVMP++Y D   Q +  QY++ ++   WGLA   +  S+R+  +E+ WR+  G+RPWLAG
Sbjct: 240 WVMPEKYDDKLAQSVDYQYIVLLEDSNWGLACESLVNSVRILKSEVNWRTKAGKRPWLAG 299

Query: 230 TVIEHMCALLDVAELAELIASG 251
            V E MC +L V  L EL+  G
Sbjct: 300 VVKEQMCGILHVQALIELLNLG 321